Mercurial > repos > vimalkumarvelayudhan > riboseqr_wrapper
diff Galaxy-Workflow-riboSeqR_chlamydomonas_test_data.ga @ 6:5a242f289347 default tip
Merge
author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
---|---|
date | Tue, 27 Oct 2015 12:29:39 +0000 |
parents | d7ce95ccf54f |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-riboSeqR_chlamydomonas_test_data.ga Tue Oct 27 12:29:39 2015 +0000 @@ -0,0 +1,155 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "", + "format-version": "0.1", + "name": "riboSeqR chlamydomonas test data", + "steps": { + "0": { + "annotation": "", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "", + "name": "Input Dataset" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 10, + "top": 10 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"Input Dataset\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "1": { + "annotation": "", + "id": 1, + "input_connections": { + "rdata_load": { + "id": 0, + "output_name": "output" + } + }, + "inputs": [], + "name": "Triplet Periodicity", + "outputs": [ + { + "name": "rdata_save", + "type": "rda" + }, + { + "name": "html_file", + "type": "html" + } + ], + "position": { + "left": 230, + "top": 10 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/vimalkumarvelayudhan/riboseqr_wrapper/riboseqr_triplet_periodicity/0.4.0", + "tool_state": "{\"__page__\": 0, \"analyze_plot_lengths\": \"\\\"26:30\\\"\", \"include_lengths\": \"\\\"25:30\\\"\", \"fasta_file\": \"null\", \"stop_codons\": \"\\\"TAG, TAA, TGA\\\"\", \"start_codons\": \"\\\"ATG\\\"\", \"rdata_load\": \"null\", \"text_legend\": \"\\\"Frame 0, Frame 1, Frame 2\\\"\", \"chromInfo\": \"\\\"/mnt/workspace/DATA/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__rerun_remap_job_id__\": null}", + "tool_version": null, + "type": "tool", + "user_outputs": [] + }, + "2": { + "annotation": "", + "id": 2, + "input_connections": { + "rdata_load": { + "id": 1, + "output_name": "rdata_save" + } + }, + "inputs": [], + "name": "Metagene Analysis", + "outputs": [ + { + "name": "rdata_save", + "type": "rda" + }, + { + "name": "html_file", + "type": "html" + } + ], + "position": { + "left": 450, + "top": 10 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/vimalkumarvelayudhan/riboseqr_wrapper/riboseqr_metagene/0.4.0", + "tool_state": "{\"__page__\": 0, \"rdata_load\": \"null\", \"unique_hit_mean\": \"\\\"10\\\"\", \"min3p\": \"\\\"-200\\\"\", \"__rerun_remap_job_id__\": null, \"cap\": \"\\\"\\\"\", \"ratio_check\": \"\\\"True\\\"\", \"max3p\": \"\\\"20\\\"\", \"plot_lengths\": \"\\\"27,28\\\"\", \"max5p\": \"\\\"200\\\"\", \"selected_lengths\": \"\\\"27,28\\\"\", \"plot_title\": \"\\\"\\\"\", \"hit_mean\": \"\\\"50\\\"\", \"selected_frames\": \"\\\"1,0\\\"\", \"chromInfo\": \"\\\"/mnt/workspace/DATA/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"min5p\": \"\\\"-20\\\"\"}", + "tool_version": null, + "type": "tool", + "user_outputs": [] + }, + "3": { + "annotation": "", + "id": 3, + "input_connections": { + "rdata_load": { + "id": 2, + "output_name": "rdata_save" + } + }, + "inputs": [], + "name": "Plot Ribosome Profile", + "outputs": [ + { + "name": "html_file", + "type": "html" + } + ], + "position": { + "left": 670, + "top": 10 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/vimalkumarvelayudhan/riboseqr_wrapper/riboseqr_ribosome_profile/0.4.0", + "tool_state": "{\"__page__\": 0, \"transcript_cap\": \"\\\"200\\\"\", \"__rerun_remap_job_id__\": null, \"transcript_length\": \"\\\"27\\\"\", \"rdata_load\": \"null\", \"transcript_name\": \"\\\"CUFF.37930.1\\\"\", \"chromInfo\": \"\\\"/mnt/workspace/DATA/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", + "tool_version": null, + "type": "tool", + "user_outputs": [] + }, + "4": { + "annotation": "", + "id": 4, + "input_connections": { + "rdata_load": { + "id": 2, + "output_name": "rdata_save" + } + }, + "inputs": [], + "name": "Differential Translation Analysis", + "outputs": [ + { + "name": "html_file", + "type": "html" + } + ], + "position": { + "left": 670, + "top": 130 + }, + "post_job_actions": {}, + "tool_errors": null, + "tool_id": "toolshed.g2.bx.psu.edu/repos/vimalkumarvelayudhan/riboseqr_wrapper/difftrans/0.1.0", + "tool_state": "{\"normalize\": \"\\\"True\\\"\", \"__page__\": 0, \"num_counts\": \"\\\"10\\\"\", \"__rerun_remap_job_id__\": null, \"rdata_load\": \"null\", \"group1\": \"\\\"1,1,1,1\\\"\", \"frames_type\": \"{\\\"select_frames\\\": \\\"each\\\", \\\"frames_each\\\": \\\"0,2\\\", \\\"__current_case__\\\": 1}\", \"group2\": \"\\\"WT,WT,M,M\\\"\", \"frames\": \"\\\"0,2\\\"\", \"slice_lengths\": \"\\\"27,28\\\"\", \"chromInfo\": \"\\\"/mnt/workspace/DATA/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", + "tool_version": null, + "type": "tool", + "user_outputs": [] + } + } +}