Mercurial > repos > vimalkumarvelayudhan > riboseqr_wrapper
diff metagene.xml @ 2:b2eb07000039
Fix spacing in environment_variables in tool_dependencies (breaks env.sh)
Cleanup help sections.
author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
---|---|
date | Tue, 21 Jul 2015 15:40:22 +0100 |
parents | c34c364ce75d |
children | d7ce95ccf54f |
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--- a/metagene.xml Tue Jul 21 14:58:34 2015 +0100 +++ b/metagene.xml Tue Jul 21 15:40:22 2015 +0100 @@ -148,18 +148,18 @@ #. Select *Triplet periodicity (R data file)* from the previous step. #. Specify length of ribosome footprint reads to be used in filtering -(lengths). Only these reads **will** be used in the analysis. + (lengths). Only these reads **will** be used in the analysis. #. Specify frames to consider. This information can be obtained -from the *Triplet periodicity (HTML report)*. + from the *Triplet periodicity (HTML report)*. -.. class:: warningmark + .. class:: warningmark -Please note that the frames specified should correspond to the -lengths of the reads. + Please note that the frames specified should correspond to the + lengths of the reads. #. Under *plotCDS parameters*, input length of footprints to be considered for -generating the plot. + generating the plot. #. Review/change other options if necessary and execute program. @@ -169,12 +169,12 @@ #. Metagene analysis (HTML report) -A HTML file with results and links to other output files - plots for -specified lengths (PDF) and R script used for the session. + A HTML file with results and links to other output files - plots for + specified lengths (PDF) and R script used for the session. #. Metagene analysis (R data file) -Used as input for the next step - *Plot Rribosome Profile*. + Used as input for the next step - *Plot Rribosome Profile*. riboSeqR functions used .......................