diff tool_data/viga_blastdb.loc.sample @ 5:ff53c4ab7257 draft default tip

Uploaded

--- a/tool_data/viga_blastdb.loc.sample	Tue Feb 27 14:43:59 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,31 +0,0 @@
-# viga_blastdb.loc
-# This is a *.loc.sample file distributed with Galaxy that enables tools
-# to use a directory of indexed data files. This one is for Bowtie2 and Tophat2.
-# See the wiki: http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
-# First create these data files and save them in your own data directory structure.
-# Then, create a bowtie_indices.loc file to use those indexes with tools.
-# Copy this file, save it with the same name (minus the .sample), 
-# follow the format examples, and store the result in this directory.
-# The file should include an one line entry for each index set.
-# The path points to the "basename" for the set, not a specific file.
-# It has four text columns seperated by TABS.
-#
-# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
-#
-# So, for example, if you had hg18 indexes stored in:
-#
-#    /data/databases/blast/nr/nr
-#
-# containing hg19 genome and hg19.*.bt2 files, such as:
-#    -rw-rw-r-- 1 james   james   914M Feb 10 18:56 hg19canon.fa
-#    -rw-rw-r-- 1 james   james   914M Feb 10 18:56 hg19canon.1.bt2
-#    -rw-rw-r-- 1 james   james   683M Feb 10 18:56 hg19canon.2.bt2
-#    -rw-rw-r-- 1 james   james   3.3K Feb 10 16:54 hg19canon.3.bt2
-#    -rw-rw-r-- 1 james   james   683M Feb 10 16:54 hg19canon.4.bt2
-#    -rw-rw-r-- 1 james   james   914M Feb 10 20:45 hg19canon.rev.1.bt2
-#    -rw-rw-r-- 1 james   james   683M Feb 10 20:45 hg19canon.rev.2.bt2
-#
-# then the viga_blastdb.loc entry could look like this:
-
-#nr	nr	Non_redundant (nr)	/data/databases/blast/nr/nr
-#swissprot	swissprot	Swissprot (swissprot)	/data/databases/blast/swissprot/swissprot