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1 function genes_cell2struct(anno_fname)
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2 % GENES_CELL2STRUCT Converts genes stored as a cell to struct.
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3 %
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4 % genes_cell2struct(anno_fname)
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5 %
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6 % -- input --
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7 % anno_fname: name of file where genes as cell are stored
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8 %
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9 % -- output --
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10 % genes as a struct
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11
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12 load(anno_fname, 'genes');
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13 if iscell(genes)
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14 genes_cell = genes;
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15 clear genes;
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16 for g = 1:length(genes_cell),
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17 gene = genes_cell{g};
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18 for e = 1:length(gene.exons)
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19 gene.exons{e} = double(gene.exons{e});
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20 end
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21 gene.exons = reshape(gene.exons, 1, length(gene.exons));
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22 gene.id = double(gene.id);
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23 gene.start = double(gene.start);
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24 gene.stop = double(gene.stop);
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25 genes(g) = gene;
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26 end
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27 save(anno_fname, 'genes');
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28 end
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