Mercurial > repos > vipints > deseq_hts

comparison deseq-hts_1.0/src/deseq-hts.sh @ 1:8ab01cc29c4b draft

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author vipints
date Wed, 27 Jun 2012 15:35:11 -0400
parents 94a108763d9e
children e27b4f7811c2
comparison
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0:94a108763d9e 1:8ab01cc29c4b
66 done 66 done
67 done 67 done
68 tmpfile=`mktemp --tmpdir=/tmp` 68 tmpfile=`mktemp --tmpdir=/tmp`
69 69
70 echo "${DIR}/../bin/get_read_counts ${GENES_FN} $tmpfile $@" 70 echo "${DIR}/../bin/get_read_counts ${GENES_FN} $tmpfile $@"
71 ${DIR}/../bin/get_read_counts ${GENES_FN} $tmpfile $@ 2>&1 71 ${DIR}/../bin/get_read_counts ${GENES_FN} $tmpfile "$@" 2>&1
72 72
73 echo 73 echo
74 echo %%%%%%%%%%%%%%%%%%%%%%%%%%% 74 echo %%%%%%%%%%%%%%%%%%%%%%%%%%%
75 echo % 3. Differential testing % 75 echo % 3. Differential testing %
76 echo %%%%%%%%%%%%%%%%%%%%%%%%%%% 76 echo %%%%%%%%%%%%%%%%%%%%%%%%%%%