Mercurial > repos > vipints > deseq_hts
diff deseq-hts_1.0/bin/start_interpreter.sh @ 0:94a108763d9e draft
deseq-hts version 1.0 wraps the DESeq 1.6.0
| author | vipints |
|---|---|
| date | Wed, 09 May 2012 20:43:47 -0400 |
| parents | |
| children | e27b4f7811c2 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/deseq-hts_1.0/bin/start_interpreter.sh Wed May 09 20:43:47 2012 -0400 @@ -0,0 +1,24 @@ +#/bin/bash +# Copyright (C) 2010-2012 Max Planck Society + +set -e + +. `dirname $0`/deseq_config.sh + +export MATLAB_RETURN_FILE=`tempfile` + +if [ "$INTERPRETER" == 'octave' ]; +then + echo exit | ${OCTAVE_BIN_PATH} --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; +fi + +if [ "$INTERPRETER" == 'matlab' ]; +then + echo exit | ${MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; +fi + +test -f $MATLAB_RETURN_FILE || exit 0 +ret=`cat $MATLAB_RETURN_FILE` ; +rm -f $MATLAB_RETURN_FILE +exit $ret +