Mercurial > repos > vipints > deseq_hts
diff deseq-hts_1.0/setup_deseq-hts.sh @ 9:e27b4f7811c2 draft
Updated DESeq version 1.12
| author | vipints <vipin@cbio.mskcc.org> |
|---|---|
| date | Tue, 08 Oct 2013 08:09:28 -0400 |
| parents | 94a108763d9e |
| children |
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--- a/deseq-hts_1.0/setup_deseq-hts.sh Wed Jun 27 15:38:39 2012 -0400 +++ b/deseq-hts_1.0/setup_deseq-hts.sh Tue Oct 08 08:09:28 2013 -0400 @@ -1,7 +1,8 @@ #!/bin/bash set -e -. ./bin/deseq_config.sh +DIR=`dirname $0` +. ${DIR}/./bin/deseq_config.sh echo ========================================== echo DESeq-hts setup script \(DESeq version $DESEQ_VERSION\) @@ -15,7 +16,6 @@ fi echo '=>' Setting DESeq-hts base directory to \"$DESEQ_PATH\" echo - echo SAMTools directory \(currently set to \"$SAMTOOLS_DIR\", system version used if left empty\) read SAMTOOLS_DIR if [ "$SAMTOOLS_DIR" == "" ];