Mercurial > repos > vipints > fml_gff3togtf

comparison gbk_to_gff.xml @ 11:5c6f33e20fcc default tip

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requirement tag added
author vipints <vipin@cbio.mskcc.org>
date Fri, 24 Apr 2015 18:04:27 -0400
parents c42c69aa81f8
children
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10:c42c69aa81f8 11:5c6f33e20fcc
1 <tool id="fml_gbk2gff" name="GBK-to-GFF" version="2.1.0"> 1 <tool id="fml_gbk2gff" name="GBK-to-GFF" version="2.1.0">
2 <description>converter</description> 2 <description>converter</description>
3 <requirements>
4 <requirement type="package" version="1.65">biopython</requirement>
5 </requirements>
3 <command interpreter="python">gbk_to_gff.py $inf_gbk &gt; $gff_format 6 <command interpreter="python">gbk_to_gff.py $inf_gbk &gt; $gff_format
4 </command> 7 </command>
5 <inputs> 8 <inputs>
6 <param format="gb,gbk,genbank" name="inf_gbk" type="data" label="Convert this query" help="GenBank flat file format consists of an annotation section and a sequence section."/> 9 <param format="gb,gbk,genbank" name="inf_gbk" type="data" label="Convert this query" help="GenBank flat file format consists of an annotation section and a sequence section."/>
7 </inputs> 10 </inputs>