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+GFFtools-GX 
+===========
+
+A collection of tools for converting genome annotation between [GTF](https://genome.ucsc.edu/FAQ/FAQformat.html#format4), [BED](https://genome.ucsc.edu/FAQ/FAQformat.html#format1), [GenBank](http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html) and [GFF](https://genome.ucsc.edu/FAQ/FAQformat.html#format3).
+
+##### INTRODUCTION
+
+Several genome annotation centers provide their data in GTF, BED, GFF and GenBank format. I have few programs, they mainly deals with converting between GTF, BED GenBank and GFF formats. They are extensively tested with files from different centers like [ENSEMBL](http://www.ensembl.org), [UCSC](https://genome.ucsc.edu/), [JGI](http://genome.jgi.doe.gov/) and [NCBI AceView](http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/HelpJan.html). These programs can be easily integrated into your galaxy instance.
+
+##### CONTENTS
+
+Included utilities are: 
+
+    BED-to-GFF: convert data from a 12 column UCSC wiggle BED format to GFF
+    GBK-to-GFF: convert data from genbank format to GFF
+    GFF-to-BED: convert data from GFF to 12 column BED format
+    GFF-to-GTF: convert data from GFF to GTF 
+    GTF-to-GFF: convert data from GTF to valid GFF
+
+test-data: Test data set. (move to your galaxy-root-folder/test-data/)
+    
+    You may need to move the test files into your test-data directory so galaxy can find them. 
+    If you want to run the functional tests eg as: 
+
+    exmaple: 
+    sh run_functional_tests.sh -id fml_gtf2gff
+
+##### REQUIREMENTS
+
+    python2.6 or 2.7 and biopython  
+
+    Galaxy should be able to automatically install biopython via Galaxy toolshed.
+
+##### COMMENTS/QUESTIONS 
+
+I can be reached at vipin [at] cbio.mskcc.org 
+
+##### LICENSE
+
+Copyright (c) 2009-2012, Friedrich Miescher Laboratory of the Max Planck Society
+
+              2013-2015, Memorial Sloan Kettering Cancer Center
+              Vipin T Sreedharan <[e-mail]>  
+All rights reserved.
+
+Licensed under the BSD 2-Clause License: <http://opensource.org/licenses/BSD-2-Clause>
+    
+    Redistribution and use in source and binary forms, with or without
+    modification, are permitted provided that the following conditions are met:
+    
+        * Redistributions of source code must retain the above copyright notice,
+          this list of conditions and the following disclaimer.
+    
+        * Redistributions in binary form must reproduce the above copyright notice,
+          this list of conditions and the following disclaimer in the documentation
+          and/or other materials provided with the distribution.
+    
+    THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+    ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+    WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+    DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+    FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+    DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+    SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+    CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+    OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+    OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+##### COURTESY
+
+To the Galaxy Team.