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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author vipints
date Tue, 07 Jun 2011 17:29:24 -0400
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GFFExamine started on Mon Apr 18 13:17:17 2011
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===Report on different level features from GFF file===

FIRST level feature(s):
	('Coding_transcript', 'gene')

SECOND level feature(s):
	('Coding_transcript', 'mRNA')

THIRD level feature(s):
	('Coding_transcript', 'CDS'), ('Coding_transcript', 'five_prime_UTR'), ('Coding_transcript', 'three_prime_UTR')

GFF Parsing modules from publicly available packages like Bio-python, Bio-perl etc. are heavily dependent on feature identifier mapping.
Here few features seems to be wrongly mapped to its child, which inturn cause problems while extracting the annotation based on feature identifier.

Error in ID mapping: Level1 feature ('Coding_transcript', 'gene') maps to Level3 feature ('Coding_transcript', 'exon')
Error in ID mapping: Level1 feature ('Coding_transcript', 'gene') maps to Level3 feature ('Coding_transcript', 'intron')
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GFFExamine finished at Mon Apr 18 13:17:17 2011
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