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view rDiff/bin/rdiff_config.sh.bak @ 2:233c30f91d66

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updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 07:15:44 -0400
parents 0f80a5141704
children
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#/bin/bash
export RDIFF_VERSION=0.3
export RDIFF_PATH=/home/vipin/shed_tools/rDiff
export RDIFF_SRC_PATH=/home/vipin/shed_tools/rDiff/src
export RDIFF_BIN_PATH=/home/vipin/shed_tools/rDiff/bin
export RDIFF_INTERPRETER=octave
export RDIFF_OCTAVE_BIN_PATH=/home/vipin/sw/bin//octave
export RDIFF_OCTAVE_MKOCT=/home/vipin/sw/bin//mkoctfile
export RDIFF_SAMTOOLS_BIN_DIR=/home/vipin/packages/samtools-0.1.18//samtools
export RDIFF_SAMTOOLS_LIB_DIR=/home/vipin/packages/samtools-0.1.18/
export RDIFF_SAMTOOLS_INCLUDE_DIR=/home/vipin/packages/samtools-0.1.18/
export RDIFF_PYTHON_PATH=/usr/bin/python