diff giveinfofasta.xml @ 0:2d76b1e109d4 draft default tip

1st Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/giveinfofasta.xml	Mon Feb 06 13:50:53 2017 -0500
@@ -0,0 +1,40 @@
+<tool id="giveinfofasta" name="GiveInfoFasta" version="0.1.0">
+    <requirements>
+        <requirement type="package" version="2.5">repet</requirement>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+    <command><![CDATA[
+        GiveInfoFasta.py -i ${input} ${stat}  
+        && 
+        cp ${input}.stats ${output_stats}
+    ]]></command>
+    <inputs>
+        <param name="input" type="data" format="fasta" label="Input file (format='fasta')"/>
+        <param name="stat" type="boolean" checked="false" truevalue="-l" falsevalue="" label="Give stats for each input sequence" help="Default=No"/>
+        <param name="label" type="text" label="Output name" help="Optionnal"/>
+    </inputs>
+    <outputs>
+        <data name="output_stats" format="txt" label="#if str($label)=='' then $input.name else $label #.stats"/>
+    </outputs>
+    <help><![CDATA[
+    Give Information about your Fasta File
+    GiveInfoFasta is a tool from the REPET suite
+     -i: name of the input file (format='fasta')
+     -l: give stats for each input sequence
+     -o: name of the output file (default=inFileName+.'stats')
+     -v: verbose (default=0/1)
+
+    **Authors**
+    Valentin Marcon
+
+    ]]></help>
+    <tests>
+        <test>
+            <param name="input" value="input"/>
+            <param name="stat" value="-l"/>
+            <output name="output_stats" file="output"/>
+        </test>
+    </tests>
+</tool>