comparison BSseeker2/FilterReads.py @ 1:8b26adf64adc draft default tip

V2.0.5

0:e6df770c0e58

#!/usr/bin/python

import sys
import os
import os.path
import re

    parser.add_option("-k", dest="keepquality", default = False, action = "store_true",
                  help="Would not filter low quality reads if specified")
    (options, args) = parser.parse_args()
    
    if (options.infile is None) or (options.outfile is None) :
        print parser.print_help()
        exit(-1)
    FilterReads(options.infile, options.outfile, options.keepquality)


# ===========================================

1:8b26adf64adc

#!/usr/bin/env python

import sys
import os
import os.path
import re

    parser.add_option("-k", dest="keepquality", default = False, action = "store_true",
                  help="Would not filter low quality reads if specified")
    (options, args) = parser.parse_args()
    
    if (options.infile is None) or (options.outfile is None) :
        parser.print_help()
        exit(-1)
    FilterReads(options.infile, options.outfile, options.keepquality)


# ===========================================