Mercurial > repos > weilong-guo > bs_seeker2

comparison BSseeker2/bs_index/wg_build.py @ 1:8b26adf64adc draft default tip

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V2.0.5
author weilong-guo
date Tue, 05 Nov 2013 01:55:39 -0500
parents e6df770c0e58
children
comparison
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0:e6df770c0e58 1:8b26adf64adc
1 from bs_utils.utils import * 1 from bs_utils.utils import *
2 2
3 3
4 def wg_build(fasta_file, build_command, ref_path, aligner): 4 def wg_build(fasta_file, build_command, ref_path, aligner):
5 5
6 # ref_path is a string that containts the directory where the reference genomes are stored with 6 # ref_path is a string that contains the directory where the reference genomes are stored with
7 # the input fasta filename appended 7 # the input Fasta filename appended
8 ref_path = os.path.join(ref_path, 8 ref_path = os.path.join(ref_path,
9 os.path.split(fasta_file)[1] + '_'+aligner) 9 os.path.split(fasta_file)[1] + '_'+aligner)
10 10
11 clear_dir(ref_path) 11 clear_dir(ref_path)
12 #--------------------------------------------------------------- 12 #---------------------------------------------------------------