Mercurial > repos > wolma > mimodd
comparison covstats.xml @ 23:5db0545b9004 draft
update to v0.1.7.3
author | wolma |
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date | Thu, 21 Jul 2016 03:55:49 -0400 |
parents | c46406466625 |
children |
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22:24154c580718 | 23:5db0545b9004 |
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1 <tool id="coverage_stats" name="Coverage Statistics" version="0.1.7.2"> | 1 <tool id="coverage_stats" name="Coverage Statistics" version="0.1.7.3"> |
2 <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description> | 2 <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description> |
3 <macros> | 3 <macros> |
4 <import>toolshed_macros.xml</import> | 4 <import>toolshed_macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"/> | 6 <expand macro="requirements" /> |
7 <version_command>python3 -m MiModD version -q</version_command> | 7 <version_command>python3 -m MiModD version -q</version_command> |
8 <command> | 8 <command> |
9 python3 -m MiModD covstats "$ifile" --ofile "$output_vcf" | 9 python3 -m MiModD covstats "$ifile" --ofile "$output_vcf" |
10 </command> | 10 </command> |
11 | 11 |
12 <inputs> | 12 <inputs> |
13 <param name="ifile" type="data" format="bcf" label="BCF input file" help="Use the Variant Calling tool to generate input for this tool."/> | 13 <param format="bcf" help="Use the Variant Calling tool to generate input for this tool." label="BCF input file" name="ifile" type="data" /> |
14 </inputs> | 14 </inputs> |
15 <outputs> | 15 <outputs> |
16 <data name="output_vcf" format="tabular" label="Coverage Statistics for ${on_string}"/> | 16 <data format="tabular" label="Coverage Statistics for ${on_string}" name="output_vcf" /> |
17 </outputs> | 17 </outputs> |
18 | 18 |
19 <help> | 19 <help> |
20 .. class:: infomark | 20 .. class:: infomark |
21 | 21 |