Mercurial > repos > wolma > mimodd
comparison bamsort.xml @ 2:72d20758ba2c
final upload
| author | wolma |
|---|---|
| date | Wed, 11 Feb 2015 09:23:43 -0500 |
| parents | a548b3c6ed00 |
| children | bdd1995c9e66 |
comparison
equal
deleted
inserted
replaced
| 1:a548b3c6ed00 | 2:72d20758ba2c |
|---|---|
| 1 <tool id="bamsort" name="Sort BAM file"> | 1 <tool id="bamsort" name="Sort BAM file"> |
| 2 <description>Sort a BAM file by coordinates (or names) of the mapped reads</description> | 2 <description>Sort a BAM file by coordinates (or names) of the mapped reads</description> |
| 3 <requirements> | 3 <macros> |
| 4 <requirement type="package">mimodd</requirement> | 4 <import>toolshed_macros.xml</import> |
| 5 </requirements> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 6 <version_command>mimodd version -q</version_command> | 7 <version_command>mimodd version -q</version_command> |
| 7 <command> | 8 <command> |
| 8 mimodd sort "$inputfile" -o "$output" --oformat $oformat $by_name | 9 mimodd sort "$inputfile" -o "$output" --oformat $oformat $by_name |
| 9 </command> | 10 </command> |
| 10 | 11 |