Mercurial > repos > wolma > mimodd
comparison covstats.xml @ 2:72d20758ba2c
final upload
| author | wolma |
|---|---|
| date | Wed, 11 Feb 2015 09:23:43 -0500 |
| parents | a548b3c6ed00 |
| children | bdd1995c9e66 |
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| 1:a548b3c6ed00 | 2:72d20758ba2c |
|---|---|
| 1 <tool id="coverage_stats" name="Coverage Statistics"> | 1 <tool id="coverage_stats" name="Coverage Statistics"> |
| 2 <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description> | 2 <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description> |
| 3 <requirements> | 3 <macros> |
| 4 <requirement type="package">mimodd</requirement> | 4 <import>toolshed_macros.xml</import> |
| 5 </requirements> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 6 <version_command>mimodd version -q</version_command> | 7 <version_command>mimodd version -q</version_command> |
| 7 <command> | 8 <command> |
| 8 mimodd covstats "$ifile" --ofile "$output_vcf" | 9 mimodd covstats "$ifile" --ofile "$output_vcf" |
| 9 </command> | 10 </command> |
| 10 | 11 |