Mercurial > repos > wolma > mimodd
comparison reheader.xml @ 2:72d20758ba2c
final upload
| author | wolma |
|---|---|
| date | Wed, 11 Feb 2015 09:23:43 -0500 |
| parents | a548b3c6ed00 |
| children | ba685c655e18 |
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| 1:a548b3c6ed00 | 2:72d20758ba2c |
|---|---|
| 1 <tool id="reheader" name="Reheader BAM file"> | 1 <tool id="reheader" name="Reheader BAM file"> |
| 2 | 2 |
| 3 <description>From a BAM file generate a new file with the original header (if any) replaced or modified by that found in a second SAM file</description> | 3 <description>From a BAM file generate a new file with the original header (if any) replaced or modified by that found in a second SAM file</description> |
| 4 <requirements> | 4 <macros> |
| 5 <requirement type="package">mimodd</requirement> | 5 <import>toolshed_macros.xml</import> |
| 6 </requirements> | 6 </macros> |
| 7 <expand macro="requirements"/> | |
| 7 <version_command>mimodd version -q</version_command> | 8 <version_command>mimodd version -q</version_command> |
| 8 <command> | 9 <command> |
| 9 #if ($str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form") or $str($co.treat_co) != "ignore": | 10 #if ($str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form") or $str($co.treat_co) != "ignore": |
| 10 mimodd header | 11 mimodd header |
| 11 #if $str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form": | 12 #if $str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form": |