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comparison bamsort.xml @ 1:a548b3c6ed00

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corrected upload
author wolma
date Wed, 11 Feb 2015 08:57:11 -0500
parents 6231ae8f87b8
children 72d20758ba2c
comparison
equal deleted inserted replaced
0:6231ae8f87b8 1:a548b3c6ed00
1 <tool id="bamsort" name="Sort BAM file"> 1 <tool id="bamsort" name="Sort BAM file">
2 <description>Sort a BAM file by coordinates (or names) of the mapped reads</description> 2 <description>Sort a BAM file by coordinates (or names) of the mapped reads</description>
3 <requirements>
4 <requirement type="package">mimodd</requirement>
5 </requirements>
3 <version_command>mimodd version -q</version_command> 6 <version_command>mimodd version -q</version_command>
4 <command> 7 <command>
5 mimodd sort "$inputfile" -o "$output" --oformat $oformat $by_name 8 mimodd sort "$inputfile" -o "$output" --oformat $oformat $by_name
6 </command> 9 </command>
7 10