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comparison reheader.xml @ 1:a548b3c6ed00

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corrected upload
author wolma
date Wed, 11 Feb 2015 08:57:11 -0500
parents 6231ae8f87b8
children 72d20758ba2c
comparison
equal deleted inserted replaced
0:6231ae8f87b8 1:a548b3c6ed00
1 <tool id="reheader" name="Reheader BAM file"> 1 <tool id="reheader" name="Reheader BAM file">
2 2
3 <description>From a BAM file generate a new file with the original header (if any) replaced or modified by that found in a second SAM file</description> 3 <description>From a BAM file generate a new file with the original header (if any) replaced or modified by that found in a second SAM file</description>
4 <requirements>
5 <requirement type="package">mimodd</requirement>
6 </requirements>
4 <version_command>mimodd version -q</version_command> 7 <version_command>mimodd version -q</version_command>
5 <command> 8 <command>
6 #if ($str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form") or $str($co.treat_co) != "ignore": 9 #if ($str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form") or $str($co.treat_co) != "ignore":
7 mimodd header 10 mimodd header
8 #if $str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form": 11 #if $str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form":