Mercurial > repos > wolma > mimodd

comparison tool_dependencies.xml @ 17:b658c34ee3fd draft

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Uploaded
author wolma
date Tue, 26 Apr 2016 07:03:26 -0400
parents e676aa6997cc
children 2742ad4d1608
comparison
equal deleted inserted replaced
16:e676aa6997cc 17:b658c34ee3fd
27 accidental use by Galaxy, MiModD uses python3 explicitly --> 27 accidental use by Galaxy, MiModD uses python3 explicitly -->
28 <action type="shell_command">rm $INSTALL_DIR/MiModD_venv/bin/python</action> 28 <action type="shell_command">rm $INSTALL_DIR/MiModD_venv/bin/python</action>
29 <action type="shell_command">. $INSTALL_DIR/MiModD_venv/bin/activate</action> 29 <action type="shell_command">. $INSTALL_DIR/MiModD_venv/bin/activate</action>
30 30
31 <!-- download and install rpy2 --> 31 <!-- download and install rpy2 -->
32 <action sha256sum="0d88f7fff21fbef523c8678ed8f850a36052edca4ce702c62f234fdcb52de441" type="download_by_url"> 32 <action type="download_file" sha256sum="beb3445cfc3a0f9a36df7de6489d2a488a5ac113c471c448e46e6d9c47cb7840">https://depot.galaxyproject.org/software/rpy2/rpy2_2.7.5_src_all.tar.gz</action>
33 https://depot.galaxyproject.org/software/rpy2/rpy2_2.7.5_src_all.tar.gz 33 <action type="shell_command">tar -xzf rpy2_2.7.5_src_all.tar.gz</action>
34 </action> 34 <action type="change_directory">rpy2-2.7.5</action>
35 <action type="set_environment_for_install"> 35 <action type="set_environment_for_install">
36 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 36 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
37 <package name="readline" version="6.3" /> 37 <package name="readline" version="6.3" />
38 </repository> 38 </repository>
39 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 39 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
46 python3 setup.py install 46 python3 setup.py install
47 </action> 47 </action>
48 <action type="change_directory">$TMP_WORK_DIR</action> 48 <action type="change_directory">$TMP_WORK_DIR</action>
49 49
50 <!-- download and install MiModD --> 50 <!-- download and install MiModD -->
51 <action type="download_by_url">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.7.2.tar.gz</action> 51 <action type="download_file">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.7.2.tar.gz</action>
52 <action type="shell_command">tar -xzf MiModD-0.1.7.2.tar.gz</action>
53 <action type="change_directory">MiModD-0.1.7.2</action>
52 <action type="set_environment_for_install"> 54 <action type="set_environment_for_install">
53 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 55 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
54 <package name="zlib" version="1.2.8" /> 56 <package name="zlib" version="1.2.8" />
55 </repository> 57 </repository>
56 </action> 58 </action>