Mercurial > repos > wolma > mimodd
comparison varextract.xml @ 21:c46406466625 draft
Uploaded
| author | wolma |
|---|---|
| date | Sat, 11 Jun 2016 19:10:44 -0400 |
| parents | 93db2f9bca12 |
| children | 5db0545b9004 |
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| 20:aba6d9b1c1f1 | 21:c46406466625 |
|---|---|
| 2 <description>from a BCF file</description> | 2 <description>from a BCF file</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>toolshed_macros.xml</import> | 4 <import>toolshed_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <version_command>mimodd version -q</version_command> | 7 <version_command>python3 -m MiModD version -q</version_command> |
| 8 <command> | 8 <command> |
| 9 mimodd varextract "$ifile" | 9 python3 -m MiModD varextract "$ifile" |
| 10 #if $len($sitesinfo) | 10 #if $len($sitesinfo) |
| 11 -p | 11 -p |
| 12 #for $source in $sitesinfo | 12 #for $source in $sitesinfo |
| 13 "${source.pre_vcf}" | 13 "${source.pre_vcf}" |
| 14 #end for | 14 #end for |