diff convert.xml @ 21:c46406466625 draft

Uploaded

--- a/convert.xml	Fri Apr 29 06:01:46 2016 -0400
+++ b/convert.xml	Sat Jun 11 19:10:44 2016 -0400
@@ -4,7 +4,7 @@
     <import>toolshed_macros.xml</import>
   </macros>
   <expand macro="requirements"/>
-  <version_command>mimodd version -q</version_command>
+  <version_command>python3 -m MiModD version -q</version_command>
   <command>
   #if $str($mode.split_on_rgs) or $str($mode.oformat)=="fastq" or $str($mode.oformat)=="gz":
     echo "Your input data is now getting processed by MiModD. The output will be split into several files based on the read groups found in the input.\nThis history item will remain in the busy state until the job is finished.\nAfter the job is showing as finished, Galaxy will start adding the results files to your history one by one.\n\nThis may take a while to complete! \n\nYou should refresh your history to see if new files have arrived.\n\nThis message is for your information only and can be deleted from the history once the job has finished." > $output_split_on_read_groups;
@@ -12,7 +12,7 @@
     mkdir converted_data;
   #end if
   
-	mimodd convert 
+	python3 -m MiModD convert 
  
   	#for $i in $mode.input_list
 	    "${i.file1}"