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corrected upload
author wolma
date Wed, 11 Feb 2015 08:57:11 -0500
parents 6231ae8f87b8
children 72d20758ba2c
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<tool id="snpeff_genomes" name="List Installed SnpEff Genomes">
  <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description>
  <requirements>
    <requirement type="package">mimodd</requirement>
  </requirements>
  <version_command>mimodd version -q</version_command>
  <command>
  	mimodd snpeff-genomes -o "$outputfile"
  </command>
  <outputs>
    <data name="outputfile" format="tabular" />
  </outputs>
<help>
.. class:: infomark

**What it does**

When executed this tool searches the host machine's SnpEff installation for properly registered and installed
genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.

</help>

</tool>