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view snpeff_genomes.xml @ 20:aba6d9b1c1f1 draft

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author wolma
date Fri, 29 Apr 2016 06:01:46 -0400
parents 93db2f9bca12
children c46406466625
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<tool id="snpeff_genomes" name="List Installed SnpEff Genomes" version="0.1.7.2">
  <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description>
  <macros>
    <import>toolshed_macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <version_command>mimodd version -q</version_command>
  <command>
  	mimodd snpeff-genomes -o "$outputfile"
  </command>
  <outputs>
    <data name="outputfile" format="tabular" />
  </outputs>
<help>
.. class:: infomark

**What it does**

When executed this tool searches the host machine's SnpEff installation for properly registered and installed
genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.

</help>

</tool>