Mercurial > repos > wolma > mimodd_aln

annotate test-data/rebased.vcf @ 0:d801b0675eb5 draft

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planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
author wolma
date Sat, 11 Nov 2017 18:18:54 -0500
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0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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1 ##fileformat=VCFv4.2
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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2 ##FILTER=<ID=PASS,Description="All filters passed">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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3 ##reference=/home/wolma/galaxy_2017/database/files/000/dataset_35.dat
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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4 ##contig=<ID=chrI,length=15072423>
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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5 ##contig=<ID=chrII,length=15279345>
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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6 ##contig=<ID=chrIII,length=13783700>
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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7 ##contig=<ID=chrIV,length=17493793>
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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8 ##contig=<ID=chrM,length=13794>
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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9 ##contig=<ID=chrV,length=20924149>
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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10 ##contig=<ID=chrX,length=17718866>
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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11 ##ALT=<ID=X,Description="Represents allele(s) other than observed.">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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12 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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13 ##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of reads supporting an indel">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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14 ##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of reads supporting an indel">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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15 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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16 ##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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17 ##INFO=<ID=RPB,Number=1,Type=Float,Description="Mann-Whitney U test of Read Position Bias (bigger is better)">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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18 ##INFO=<ID=MQB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality Bias (bigger is better)">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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19 ##INFO=<ID=BQB,Number=1,Type=Float,Description="Mann-Whitney U test of Base Quality Bias (bigger is better)">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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20 ##INFO=<ID=MQSB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality vs Strand Bias (bigger is better)">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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21 ##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric.">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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22 ##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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23 ##INFO=<ID=ICB,Number=1,Type=Float,Description="Inbreeding Coefficient Binomial test (bigger is better)">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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24 ##INFO=<ID=HOB,Number=1,Type=Float,Description="Bias in the number of HOMs number (smaller is better)">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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25 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes for each ALT allele, in the same order as listed">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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26 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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27 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Number of high-quality ref-forward , ref-reverse, alt-forward and alt-reverse bases">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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28 ##INFO=<ID=MQ,Number=1,Type=Integer,Description="Average mapping quality">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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29 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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30 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Number of high-quality bases">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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31 ##FORMAT=<ID=DPR,Number=R,Type=Integer,Description="Number of high-quality bases observed for each allele">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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32 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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33 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Phred-scaled Genotype Quality">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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34 ##source=MiModD varcall (version 0.1.8.0)
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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35 ##MiModDCommand=mimodd varcall /home/wolma/galaxy_2017/database/files/000/dataset_35.dat /home/wolma/galaxy_2017/database/files/000/dataset_54.dat --index-files /home/wolma/galaxy_2017/database/files/_metadata_files/000/metadata_14.dat --ofile /home/wolma/galaxy_2017/database/files/000/dataset_58.dat --depth 250 --verbose --quiet
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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36 ##samtoolsCommand=n.a. (wrapped by MiModD)
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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37 ##bcftools_callCommand=n.a. (wrapped by MiModD)
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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38 ##rginfo=<ID=0,Rgid="000",Name="N2">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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39 ##rginfo=<ID=1,Rgid="266-1",Name="ot266",Description="mutant strain carrying the vab-3 allele ot266">
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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40 ##samtoolsVersion=1.2+htslib-1.2.1
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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41 ##bcftools_callVersion=1.2+htslib-1.2.1
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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42 ##bcftools_concatVersion=1.2+htslib-1.2.1
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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43 ##bcftools_viewVersion=1.2+htslib-1.2.1
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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44 ##bcftools_viewCommand=view /home/wolma/galaxy_2017/database/files/000/dataset_58.dat
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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45 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT N2 ot266
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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46 chrI 855 . G C 231.0 . DP=27;VDB=2.48853e-13;SGB=13.8822;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,11,13;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:255,72,0:24:0,24:86
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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47 chrI 885 . t tTCT 69.0 . INDEL;IDV=4;IMF=0.0769231;DP=56;VDB=2.27029e-09;SGB=1.27626;MQSB=1;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=16,17,3,1;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,3,60:1:1,0:11 0/1:105,0,255:36:32,4:96
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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48 chrI 912 . A T 195.0 . DP=92;VDB=0.233506;SGB=-8.71232;RPB=0.810719;MQB=1;MQSB=1;BQB=0.974933;MQ0F=0;ICB=0.5;HOB=0.5;AC=2;AN=4;DP4=30,38,9,13;MQ=60 GT:PL:DP:DPR:GQ 0/1:26,0,54:2:1,1:25 0/1:204,0,255:88:67,21:127
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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49 chrI 921 . G A 341.0 . DP=101;VDB=0.0381167;SGB=14.497;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AC=4;AN=4;DP4=0,1,41,52;MQ=60 GT:PL:DP:DPR:GQ 1/1:110,6,0:2:0,2:25 1/1:255,239,0:92:1,91:127
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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50 chrI 942 . A T 182.0 . DP=147;VDB=0.486211;SGB=-13.0084;RPB=0.177913;MQB=1;MQSB=1;BQB=0.00895523;MQ0F=0;ICB=0.5;HOB=0.5;AC=2;AN=4;DP4=42,63,15,21;MQ=60 GT:PL:DP:DPR:GQ 0/1:20,0,116:4:3,1:17 0/1:198,0,255:137:102,35:127
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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51 chrI 945 . G A 396.0 . DP=144;VDB=0.936097;SGB=17.553;RPB=0.198891;MQB=1;MQSB=1;BQB=0.921548;MQ0F=0;ICB=0.3;HOB=0.125;AC=3;AN=4;DP4=7,15,50,66;MQ=60 GT:PL:DP:DPR:GQ 1/1:177,12,0:4:0,4:19 0/1:255,0,86:134:22,112:78
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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52 chrI 962 . G T 379.0 . DP=141;VDB=0.0554366;SGB=20.8365;MQSB=1;MQ0F=0;AC=4;AN=4;DP4=0,0,58,75;MQ=60 GT:PL:DP:DPR:GQ 1/1:148,12,0:4:0,4:36 1/1:255,255,0:129:0,129:127
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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53 chrI 973 . A G,T 329.0 . DP=140;VDB=0.0208629;SGB=18.7462;RPB=0.14071;MQB=1;MQSB=1;BQB=0.978744;MQ0F=0;ICB=0.3;HOB=0.125;AC=3,0;AN=4;DP4=7,12,44,71;MQ=60 GT:PL:DP:DPR:GQ 1/1:110,6,0,110,6,110:2:0,2,0:14 0/1:255,0,65,255,255,255:132:19,112,1:56
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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54 chrI 974 . A T 9.21175 . DP=139;VDB=0.000145084;SGB=10.9211;RPB=0.0841531;MQB=1;MQSB=1;BQB=0.939818;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=44,72,7,11;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,6,110:2:2,0:14 0/1:45,0,255:132:114,18:36
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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55 chrI 998 . A T 99.0 . DP=98;VDB=0.00196934;SGB=10.9211;RPB=0.976264;MQB=1;MQSB=1;BQB=0.993458;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=33,40,5,13;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,6,110:2:2,0:12 0/1:134,0,255:89:71,18:127
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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56 chrI 1000 . A T 93.0 . DP=108;VDB=0.000325892;SGB=11.6141;RPB=0.945574;MQB=1;MQSB=1;BQB=0.923217;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=34,48,9,10;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,6,110:2:2,0:13 0/1:128,0,255:99:80,19:120
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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57 chrI 1028 . G A 105.0 . DP=63;VDB=0.000108954;SGB=6.07412;RPB=0.732968;MQB=1;MQSB=1;BQB=0.91987;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=18,30,6,5;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,6,110:2:2,0:12 0/1:140,0,255:57:46,11:127
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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58 chrI 1041 . C T 6.52941 . DP=40;VDB=0.00951951;SGB=1.94933;RPB=0.416648;MQB=1;MQSB=1;BQB=0.652425;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=13,21,3,2;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,6,71:2:2,0:14 0/1:42,0,255:37:32,5:33
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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59 chrI 1045 . T A 273.0 . DP=36;VDB=1.8168e-09;SGB=2.16465;RPB=0.578971;MQB=1;MQSB=1;BQB=0.637911;MQ0F=0;ICB=0.3;HOB=0.125;AC=3;AN=4;DP4=4,1,11,18;MQ=60 GT:PL:DP:DPR:GQ 1/1:54,6,0:2:0,2:13 0/1:255,0,51:32:5,27:43
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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60 chrI 1048 . G A 266.0 . DP=30;VDB=1.83438e-10;SGB=2.65329;MQSB=1;MQ0F=0;AC=4;AN=4;DP4=0,0,10,18;MQ=60 GT:PL:DP:DPR:GQ 1/1:35,3,0:1:0,1:20 1/1:255,81,0:27:0,27:98
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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diff changeset
61 chrI 1053 . c cT 8.64418 . INDEL;IDV=1;IMF=0.047619;DP=21;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:32,3,0:1:0,1:16
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
62 chrI 1054 . A T 231.0 . DP=18;VDB=4.22339e-07;SGB=7.05893;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,5,9;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:255,42,0:14:0,14:54
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
63 chrI 1412 . T C 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
64 chrI 1414 . G A 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
65 chrI 1421 . G A 10.6576 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:35,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
66 chrI 2752 . C T 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
67 chrI 13851 . T C 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
68 chrI 13856 . T A 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
69 chrI 13874 . A G 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
70 chrI 13876 . C T 10.6576 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:35,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
71 chrI 13901 . C A 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
72 chrI 13919 . C A 9.75336 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:34,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
73 chrI 13921 . T C 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
74 chrI 13944 . T A 11.8912 . DP=2;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:6
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
75 chrI 13952 . G T 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
76 chrI 13958 . C T 8.01478 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:32,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
77 chrI 13970 . C T 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
78 chrI 13993 . A G 10.6576 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:35,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
79 chrI 14201 . G A 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
80 chrI 14223 . A G 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
81 chrI 14242 . T C 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
82 chrI 14246 . C T 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
83 chrI 14247 . T C 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
84 chrI 22325 . T C 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
85 chrI 23943 . g gG 41.4034 . INDEL;IDV=2;IMF=1;DP=2;VDB=0.94;SGB=0.0985265;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,1,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:66,6,0:2:0,2:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
86 chrII 239 . A G 9.75336 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:34,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
87 chrII 252 . A T 44.4523 . DP=11;VDB=0.0411132;SGB=0.620439;RPB=0.916482;MQB=0.916482;MQSB=1.00775;BQB=0.366593;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=4,3,2,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:75,0,160:10:7,3:74
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
88 chrII 265 . A G 161.0 . DP=14;VDB=0.00228484;SGB=4.69269;RPB=0.965069;MQB=1;MQSB=0.966012;BQB=0.686908;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=4,1,3,6;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:191,0,96:14:5,9:96
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
89 chrII 278 . A T 167.0 . DP=14;VDB=0.000574122;SGB=4.69269;RPB=0.249352;MQB=1;MQSB=0.966012;BQB=0.867428;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=2,3,5,4;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:197,0,111:14:5,9:111
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
90 chrII 279 . A T,G 38.2143 . DP=14;VDB=0.0501588;SGB=1.94933;RPB=0.448332;MQB=1;MQSB=0.966012;BQB=0.118179;MQ0F=0;ICB=1;HOB=0.5;AC=1,0;AN=2;DP4=7,2,0,5;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0,0,0,0:0:0,0,0:0 0/1:69,0,186,71,175,247:14:9,4,1:67
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
91 chrII 291 . A G 86.0 . DP=14;VDB=0.0340507;SGB=1.94933;RPB=1;MQB=1;MQSB=0.966012;BQB=0.197899;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=6,3,1,4;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:116,0,189:14:9,5:116
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
92 chrII 300 . A C 231.0 . DP=14;VDB=3.24567e-05;SGB=7.05893;MQSB=0.966012;MQ0F=0;AC=2;AN=2;DP4=0,0,7,7;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:255,42,0:14:0,14:53
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
93 chrII 304 . A T 137.0 . DP=14;VDB=0.000156924;SGB=4.00342;RPB=0.991701;MQB=1;MQSB=0.966012;BQB=0.703221;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=1,5,6,2;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:167,0,107:14:6,8:108
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
94 chrII 305 . A T 27.2811 . DP=14;VDB=0.0785113;SGB=0.620439;RPB=0.973096;MQB=1;MQSB=0.966012;BQB=0.738577;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=6,5,1,2;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:59,0,236:14:11,3:56
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
95 chrII 317 . A G 101.0 . DP=14;VDB=0.00324086;SGB=2.63044;RPB=0.94925;MQB=1;MQSB=0.966012;BQB=0.997919;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=4,4,3,3;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:131,0,172:14:8,6:127
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
96 chrII 331 . A T 121.0 . DP=14;VDB=0.0126037;SGB=3.31571;RPB=0.497296;MQB=0.966012;MQSB=0.966012;BQB=0.834543;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=5,2,2,5;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:151,0,154:14:7,7:127
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
97 chrII 343 . A G 90.0 . DP=9;VDB=0.00476095;SGB=1.97062;RPB=0.346719;MQB=0.924584;MQSB=0.924584;BQB=0.462292;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=1,2,5,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:120,0,74:9:3,6:74
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
98 chrII 11921 . A T 7.18923 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ 1/1:31,3,0:1:0,1:4 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
99 chrII 17381 . G A 4.14838 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,1,0;MQ=60 GT:PL:DP:DPR:GQ 0/1:32,0,34:2:1,1:32 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
100 chrII 17518 . A T 14.9987 . DP=3;VDB=0.5;SGB=0.0985265;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,2,0;MQ=60 GT:PL:DP:DPR:GQ 0/1:45,0,29:3:1,2:30 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
101 chrII 19959 . T A 7.18923 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ 1/1:31,3,0:1:0,1:4 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
102 chrIII 7994 . C T 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
103 chrIII 8004 . T C 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
104 chrIII 8023 . A G 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
105 chrIII 8026 . A G 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
106 chrIII 8027 . A G 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
107 chrIII 8039 . C A 9.75336 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:34,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
108 chrIII 9659 . C T 9.75336 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:34,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
109 chrIII 9662 . G T 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
110 chrIII 9700 . A T 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
111 chrIV 9450 . A G 4.78389 . DP=2;SGB=-0.516033;RPB=1;MQB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=1,0,1,0;MQ=60 GT:PL:DP:DPR:GQ 0/1:33,0,27:2:1,1:28 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
112 chrIV 16467 . T C 4.14182 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,1,0;MQ=60 GT:PL:DP:DPR:GQ 0/1:32,0,25:2:1,1:26 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
113 chrIV 16478 . C G 4.58205 . DP=3;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=0,2,1,0;MQ=60 GT:PL:DP:DPR:GQ 0/1:35,0,23:2:1,1:28 0/0:0,3,29:1:1,0:5
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
114 chrIV 16499 . A G 3.42278 . DP=3;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=1,1,0,1;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,6,79:2:2,0:4 0/1:35,3,0:1:0,1:3
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
115 chrIV 16537 . aaga a 25.8002 . INDEL;IDV=1;IMF=1;DP=3;VDB=0.206307;SGB=-0.516033;MQSB=1;MQ0F=0;ICB=0.3;HOB=0.125;AC=1;AN=4;DP4=1,1,0,1;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,6,120:2:2,0:4 0/1:60,3,0:1:0,1:3
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
116 chrIV 16633 . C A 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
117 chrIV 16697 . C T 52.0 . DP=2;VDB=0.48;SGB=-0.759771;MQSB=1;MQ0F=0;AC=4;AN=4;DP4=0,0,1,1;MQ=60 GT:PL:DP:DPR:GQ 1/1:40,3,0:1:0,1:9 1/1:36,3,0:1:0,1:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
118 chrIV 16709 . C G 5.30774 . DP=3;VDB=0.98;SGB=0.0985265;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=0.3;HOB=0.125;AC=3;AN=4;DP4=0,1,2,0;MQ=60 GT:PL:DP:DPR:GQ 0/1:0,3,39:1:1,0:3 1/1:38,6,0:2:0,2:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
119 chrIV 16729 . C T 4.14943 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=0.5;HOB=0.5;AC=2;AN=4;DP4=0,1,1,0;MQ=60 GT:PL:DP:DPR:GQ 0/1:0,3,37:1:1,0:3 0/1:35,3,0:1:0,1:3
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
120 chrIV 16769 . A T 13.7861 . DP=2;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:6
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
121 chrIV 16814 . A G 3.03341 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=1,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:30,0,31:2:1,1:30
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
122 chrIV 16815 . C A 48.4033 . DP=2;VDB=0.42;SGB=0.0985265;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,1,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:73,6,0:2:0,2:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
123 chrIV 16823 . A C 4.14995 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:32,0,28:2:1,1:29
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
124 chrIV 16829 . T C 3.56356 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=1,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:31,0,32:2:1,1:31
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
125 chrIV 16833 . A T,G 14.5409 . DP=2;VDB=0.42;SGB=0.0985265;MQSB=1;MQ0F=0;AC=1,1;AN=2;DP4=0,0,1,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0,0,0,0:0:0,0,0:0 1/2:65,34,31,34,0,31:2:0,1,1:29
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
126 chrIV 16834 . T A 3.56452 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=1,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:31,0,27:2:1,1:28
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
127 chrIV 16894 . T C 55.0 . DP=2;VDB=0.58;SGB=-0.759771;MQ0F=0;AC=4;AN=4;DP4=0,0,2,0;MQ=60 GT:PL:DP:DPR:GQ 1/1:41,3,0:1:0,1:9 1/1:38,3,0:1:0,1:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
128 chrIV 16899 . T A 49.5769 . DP=2;VDB=0.58;SGB=-0.759771;MQ0F=0;AC=4;AN=4;DP4=0,0,2,0;MQ=60 GT:PL:DP:DPR:GQ 1/1:41,3,0:1:0,1:9 1/1:33,3,0:1:0,1:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
129 chrIV 16902 . T G 55.0 . DP=2;VDB=0.58;SGB=-0.759771;MQ0F=0;AC=4;AN=4;DP4=0,0,2,0;MQ=60 GT:PL:DP:DPR:GQ 1/1:41,3,0:1:0,1:9 1/1:38,3,0:1:0,1:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
130 chrIV 16921 . A G 68.0 . DP=3;VDB=0.58;SGB=-0.759771;MQ0F=0;AC=4;AN=4;DP4=0,0,2,0;MQ=60 GT:PL:DP:DPR:GQ 1/1:54,3,0:1:0,1:11 1/1:38,3,0:1:0,1:11
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
131 chrIV 16951 . C A 76.0 . DP=3;VDB=0.740702;SGB=-0.8159;MQSB=1;MQ0F=0;AC=4;AN=4;DP4=0,0,2,1;MQ=60 GT:PL:DP:DPR:GQ 1/1:35,3,0:1:0,1:11 1/1:65,6,0:2:0,2:13
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
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diff changeset
132 chrIV 17000 . T C 149.0 . DP=7;VDB=0.103091;SGB=-0.680382;MQSB=1;MQ0F=0;AC=4;AN=4;DP4=0,0,6,1;MQ=60 GT:PL:DP:DPR:GQ 1/1:41,3,0:1:0,1:14 1/1:132,18,0:6:0,6:29
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
133 chrIV 17020 . C G,A 99.0 . DP=8;VDB=0.391417;SGB=2.55596;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0;AC=1,1;AN=4;DP4=0,1,7,0;MQ=60 GT:PL:DP:DPR:GQ 0/0:0,3,34,3,34,34:1:1,0,0:3 1/2:150,33,15,125,0,122:7:0,6,1:10
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
134 chrIV 17024 . T C 14.4249 . DP=7;VDB=0.48;SGB=0.00473136;RPB=0.6;MQB=1;BQB=0.8;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=5,0,2,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:45,0,103:7:5,2:44
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
135 chrIV 17037 . T A 37.8983 . DP=7;VDB=0.460446;SGB=0.620439;RPB=1.01283;MQB=1.01283;BQB=0.810265;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=4,0,3,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:68,0,95:7:4,3:69
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
136 chrIV 17051 . C T 103.0 . DP=6;VDB=0.534935;SGB=1.41704;MQ0F=0;AC=2;AN=2;DP4=0,0,5,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:127,15,0:5:0,5:22
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
137 chrIV 17112 . T A 3.03494 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:30,0,30:2:1,1:30
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
138 chrV 5001 . T G 4.94666 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:28,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
139 chrV 10045 . C T 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
140 chrV 10095 . T A 50.0 . DP=2;VDB=0.56;SGB=0.0985265;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,1,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:75,6,0:2:0,2:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
141 chrV 10108 . C A 4.15167 . DP=2;SGB=-0.516033;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:32,0,32:2:1,1:32
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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142 chrV 10158 . C T 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
143 chrV 10166 . G A 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
144 chrV 10205 . A G 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
145 chrV 10229 . G C 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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146 chrV 10249 . G T 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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147 chrV 10250 . C T 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
148 chrV 10251 . T C 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
149 chrV 10257 . A T 6.39934 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:30,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
150 chrV 10279 . T C 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
151 chrV 14271 . T C 39.4036 . DP=2;VDB=0.06;SGB=0.0985265;MQ0F=0;AC=2;AN=2;DP4=0,0,2,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:64,6,0:2:0,2:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
152 chrV 14273 . G C 39.4036 . DP=2;VDB=0.06;SGB=0.0985265;MQ0F=0;AC=2;AN=2;DP4=0,0,2,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:64,6,0:2:0,2:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
153 chrV 14285 . T C 76.0 . DP=3;VDB=0.074936;SGB=0.461295;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,2,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:100,9,0:3:0,3:13
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
154 chrV 14335 . T G 19.5632 . DP=6;VDB=0.18;SGB=0.00473136;RPB=1;MQB=1;MQSB=1;BQB=0.875;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=4,0,0,2;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:50,0,98:6:4,2:49
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
155 chrV 14337 . A G 100.0 . DP=6;VDB=0.405004;SGB=1.41704;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,4,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:132,0,14:6:1,5:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
156 chrV 14339 . A G 154.0 . DP=6;VDB=0.189016;SGB=1.97062;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,4,2;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:178,18,0:6:0,6:25
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
157 chrV 14346 . C T 100.0 . DP=6;VDB=0.405004;SGB=1.41704;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,4,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:132,0,18:6:1,5:14
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
158 chrV 14367 . C A 104.0 . DP=5;VDB=0.220638;SGB=0.908071;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,2,2;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:128,12,0:4:0,4:19
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
159 chrV 14445 . A G 21.4343 . DP=2;VDB=0.06;SGB=0.0985265;MQ0F=0;AC=2;AN=2;DP4=0,0,0,2;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:46,6,0:2:0,2:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
160 chrV 14481 . G A 4.15167 . DP=2;SGB=-0.516033;RPB=1;MQB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:32,0,32:2:1,1:32
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
161 chrV 14488 . G T 4.15167 . DP=2;SGB=-0.516033;RPB=1;MQB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:32,0,32:2:1,1:32
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
162 chrV 14528 . G A 3.56356 . DP=2;SGB=-0.516033;RPB=1;MQB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:31,0,32:2:1,1:31
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
163 chrV 14530 . A G 4.13076 . DP=2;SGB=-0.516033;RPB=1;MQB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=0,1,0,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:32,0,22:2:1,1:23
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
164 chrV 14538 . T C 32.4055 . DP=2;VDB=0.06;SGB=0.0985265;MQ0F=0;AC=2;AN=2;DP4=0,0,0,2;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:57,6,0:2:0,2:9
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
165 chrX 1592 . T C 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
166 chrX 1622 . G T 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
167 chrX 1648 . A C 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
168 chrX 1650 . T A 10.6576 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:35,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
169 chrX 6015 . A T 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ 1/1:38,3,0:1:0,1:4 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
170 chrX 6032 . G A 8.01478 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ 1/1:32,3,0:1:0,1:4 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
171 chrX 6058 . ta t 15.3937 . INDEL;IDV=1;IMF=1;DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ 1/1:40,3,0:1:0,1:4 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
172 chrX 6118 . A G 15.394 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ 1/1:40,3,0:1:0,1:4 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
173 chrX 6143 . G A 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,0,1;MQ=60 GT:PL:DP:DPR:GQ 1/1:37,3,0:1:0,1:4 ./.:0,0,0:0:0,0:0
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
174 chrX 6984 . T A 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
175 chrX 7025 . A G 12.5173 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:37,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
176 chrX 10527 . c cC 8.86989 . INDEL;IDV=1;IMF=1;DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:33,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
177 chrX 10535 . T C 11.8912 . DP=2;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:6
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
178 chrX 10562 . C G 18.2649 . DP=7;VDB=0.18;SGB=0.00473136;RPB=0.8;MQB=1;MQSB=1;BQB=0.9;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=4,1,2,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 0/1:49,0,131:7:5,2:48
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
179 chrX 10595 . T G 148.0 . DP=7;VDB=0.00429645;SGB=2.55596;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,6,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:172,21,0:7:0,7:29
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
180 chrX 10629 . gt g 45.8065 . INDEL;IDV=4;IMF=0.666667;DP=6;VDB=0.14;SGB=0.0985265;MQ0F=0;AC=2;AN=2;DP4=0,0,2,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:70,6,0:2:0,2:13
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
181 chrX 10630 . T C,G 10.4616 . DP=2;VDB=0.32;SGB=0.0985265;MQSB=1;MQ0F=0;AC=1,1;AN=2;DP4=0,0,1,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0,0,0,0:0:0,0,0:0 1/2:58,29,26,32,0,29:2:0,1,1:25
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
182 chrX 10643 . G T 34.5919 . DP=3;VDB=0.02;SGB=0.0985265;MQSB=1;MQ0F=0;AC=2;AN=2;DP4=0,0,1,1;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:59,6,0:2:0,2:11
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
183 chrX 15480 . T C 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
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diff changeset
184 chrX 15495 . G C 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
185 chrX 24890 . C G 13.4669 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:38,3,0:1:0,1:4
d801b0675eb5 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
wolma
parents:
diff changeset
186 chrX 24935 . A C 11.5799 . DP=1;SGB=-0.157211;MQ0F=0;AC=2;AN=2;DP4=0,0,1,0;MQ=60 GT:PL:DP:DPR:GQ ./.:0,0,0:0:0,0:0 1/1:36,3,0:1:0,1:4