annotate tool-data/all_fasta.loc.sample @ 1:bfcd121b99bf draft default tip

planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 44e872b808f88eacd05963fc2478da2c07b50228
author wolma
date Thu, 22 Mar 2018 10:32:39 -0400
parents f0f2795de2c7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
parents:
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1 #This file lists the locations and dbkeys of all the fasta files
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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diff changeset
2 #under the "genome" directory (a directory that contains a directory
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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3 #for each build). The script extract_fasta.py will generate the file
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
parents:
diff changeset
4 #all_fasta.loc. This file has the format (white space characters are
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
parents:
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5 #TAB characters):
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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6 #
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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7 #<unique_build_id> <dbkey> <display_name> <file_path>
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
parents:
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8 #
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
parents:
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9 #So, all_fasta.loc could look something like this:
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
parents:
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10 #
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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14 #
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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15 #Your all_fasta.loc file should contain an entry for each individual
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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16 #fasta file. So there will be multiple fasta files for each build,
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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17 #such as with hg19 above.
f0f2795de2c7 planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 528bcf3b769c7c73f119b2a176d19071f9ef5312
wolma
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18 #