Mercurial > repos > wolma > mimodd_snpeff

diff snpeff_genomes.xml @ 0:01e09a4cacf7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit b36048cd608ede0ec6f6559648525c9350caae34-dirty
author wolma
date Sat, 11 Nov 2017 18:20:20 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpeff_genomes.xml	Sat Nov 11 18:20:20 2017 -0500
@@ -0,0 +1,33 @@
+<tool id="mimodd_snpeff_genomes" name="List Installed SnpEff Genomes" version="@MIMODD_WRAPPER_VERSION@">
+    <description>
+    available for variant annotation with MiModD
+    </description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <expand macro="version_command" />
+    <command><![CDATA[
+  	mimodd snpeff-genomes -o '$outputfile'
+    ]]></command>
+    
+    <inputs>
+    </inputs>
+    
+    <outputs>
+        <data name="outputfile" format="tabular" />
+    </outputs>
+    
+    <help><![CDATA[
+.. class:: infomark
+
+**What it does**
+
+When executed this tool searches the host machine's SnpEff installation for properly registered and installed
+genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.
+
+@HELP_FOOTER@
+    ]]></help>
+    <expand macro="citations" />
+</tool>