diff macros.xml @ 1:99dfde12ee53 draft

planemo upload for repository https://github.com/wm75/mimodd_galaxy_wrappers commit 24cc567ad105450d1c554f09a3467eff671d9864

--- a/macros.xml	Sat Nov 11 18:20:20 2017 -0500
+++ b/macros.xml	Mon Dec 18 03:41:24 2017 -0500
@@ -1,7 +1,7 @@
 <macros>
     <token name="@MIMODD_VERSION_REQUIRED@">0.1.8</token>
     <token name="@MIMODD_REAL_VERSION@">0.1.8</token>
-    <token name="@MIMODD_WRAPPER_VERSION@">0.1.8_0</token>
+    <token name="@MIMODD_WRAPPER_VERSION@">0.1.8_1</token>
     <token name="@HELP_FOOTER@"><![CDATA[
 ----
 
@@ -9,7 +9,7 @@
 
    For **additional help** see these resources: 
 
-- The complete `MiModD User Guide <http://mimodd.readthedocs.io/en/v0.1.8/usage_toc.html>`__
+- The complete `MiModD User Guide <http://mimodd.readthedocs.io/en/doc0.1.8/usage_toc.html>`__
 
 - The `MiModD help forum <https://groups.google.com/forum/#!forum/mimodd>`__ reachable also via `email <mailto:[e-mail]>`__
 
@@ -41,6 +41,34 @@
             </citation>
         </citations>
     </xml>
+    <macro name="YYYY-MM-DD_format_validator">
+        <validator type="expression" message="YYYY-MM-DD date format required">not value or (len(value.split('-')) == 3 and all(part.isdigit() and len(part)==expect_len for part, expect_len in zip(value.split('-'), [4,2,2])))</validator>
+    </macro>
+    <macro name="known_sequencing_platform options">
+        <option value="ILLUMINA">ILLUMINA</option>
+        <option value="PACBIO">PACBIO</option>
+        <option value="IONTORRENT">IONTORRENT</option>
+        <option value="ONT">ONT</option>
+        <option value="LS454">LS454</option>
+        <option value="SOLID">SOLID</option>
+        <option value="HELICOS">HELICOS</option>
+        <option value="CAPILLARY">CAPILLARY</option>
+    </macro>
+    <macro name="lex_sam_header" token_message="SAM header data may not contain non-ASCII characters.">
+        <validator type="expression" message="@MESSAGE@">not value or all(ord(c) &lt; 127 for c in value)</validator>
+        <sanitizer invalid_char="">
+            <valid initial="string.printable">
+                <remove preset="string.whitespace" value="&#39;" />
+                <add value=" " />
+            </valid>
+            <mapping initial="none">
+                <add source="&#39;" target="&#39;&quot;&#39;&quot;&#39;" />
+                <add source="&#09;" target="&#32;" />
+                <add source="&#10;" target="&#32;" />
+                <add source="&#13;" target="&#32;" />
+            </mapping>
+        </sanitizer>
+    </macro>
 </macros>