Mercurial > repos > wolma > mimodd_snpeff_genomes

diff snpeff_genomes.xml @ 0:dba25dfccb43 draft

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Imported from capsule None
author wolma
date Sat, 13 Dec 2014 17:19:36 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpeff_genomes.xml	Sat Dec 13 17:19:36 2014 -0500
@@ -0,0 +1,23 @@
+<tool id="snpeff_genomes" name="List Installed SnpEff Genomes">
+  <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description>
+  <requirements>
+    <requirement type="package" version="0.1.5">mimodd</requirement>
+  </requirements>
+  <version_command>mimodd version -q</version_command>
+  <command>
+  	mimodd snpeff-genomes -o $outputfile
+  </command>
+  <outputs>
+    <data name="outputfile" format="tabular" />
+  </outputs>
+<help>
+.. class:: infomark
+
+**What it does**
+
+When executed this tool searches the host machine's SnpEff installation for properly registered and installed
+genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.
+
+</help>
+
+</tool>