view Galaxy-Workflow-MiModD_example_workflow_2.ga @ 1:87bfe31ce878 default tip

workflows for MiModD 0.1.6
author Wolfgang Maier
date Thu, 04 Jun 2015 18:19:52 +0200
parents 9f64313f2ccb
children
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{
    "a_galaxy_workflow": "true", 
    "annotation": "", 
    "format-version": "0.1", 
    "name": "MiModD example workflow 2", 
    "steps": {
        "0": {
            "annotation": "", 
            "id": 0, 
            "input_connections": {}, 
            "inputs": [
                {
                    "description": "", 
                    "name": "Input Dataset"
                }
            ], 
            "label": null, 
            "name": "Input dataset", 
            "outputs": [], 
            "position": {
                "left": 172, 
                "top": 174
            }, 
            "tool_errors": null, 
            "tool_id": null, 
            "tool_state": "{\"name\": \"Input Dataset\"}", 
            "tool_version": null, 
            "type": "data_input", 
            "user_outputs": [], 
            "uuid": "None"
        }, 
        "1": {
            "annotation": "", 
            "id": 1, 
            "input_connections": {
                "ref_genome": {
                    "id": 0, 
                    "output_name": "output"
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            "inputs": [], 
            "label": null, 
            "name": "SNAP Read Alignment", 
            "outputs": [
                {
                    "name": "outputfile", 
                    "type": "bam"
                }
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            "position": {
                "left": 359, 
                "top": 366
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            "post_job_actions": {}, 
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            "uuid": "None"
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                    "output_name": "outputfile"
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            }, 
            "inputs": [], 
            "label": null, 
            "name": "Variant Calling", 
            "outputs": [
                {
                    "name": "output_vcf", 
                    "type": "bcf"
                }
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            "position": {
                "left": 708, 
                "top": 362
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            "uuid": "None"
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        "3": {
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            "id": 3, 
            "input_connections": {
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                    "id": 2, 
                    "output_name": "output_vcf"
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            "inputs": [], 
            "label": null, 
            "name": "Extract Variant Sites", 
            "outputs": [
                {
                    "name": "output_vcf", 
                    "type": "vcf"
                }
            ], 
            "position": {
                "left": 1104.5, 
                "top": 225
            }, 
            "post_job_actions": {}, 
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                    "output_name": "output_vcf"
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            "inputs": [], 
            "label": null, 
            "name": "Coverage Statistics", 
            "outputs": [
                {
                    "name": "output_vcf", 
                    "type": "tabular"
                }
            ], 
            "position": {
                "left": 1133, 
                "top": 453
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            "post_job_actions": {}, 
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            "type": "tool", 
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        "5": {
            "annotation": "", 
            "id": 5, 
            "input_connections": {
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                "list_input_0|bamfile": {
                    "id": 1, 
                    "output_name": "outputfile"
                }
            }, 
            "inputs": [], 
            "label": null, 
            "name": "Deletion Prediction for paired-end data", 
            "outputs": [
                {
                    "name": "outputfile", 
                    "type": "gff"
                }
            ], 
            "position": {
                "left": 1064, 
                "top": 665
            }, 
            "post_job_actions": {}, 
            "tool_errors": null, 
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            "tool_version": "1.0.0", 
            "type": "tool", 
            "user_outputs": [], 
            "uuid": "None"
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    }, 
    "uuid": "ebf4ae7e-e823-4b67-a0aa-2a0e70b48db8"
}