Mercurial > repos > workflow4metabolomics > influx_si
annotate test-data/e_coli_i.ftbl @ 1:4e3d4318113b draft
planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/blob/master/tools/influx_si/ commit e9183269ad5b2e8f4551f301dc736df330aa73c6
author | workflow4metabolomics |
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date | Wed, 13 Sep 2023 19:52:44 +0000 |
parents | 9b03a930b08b |
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rev | line source |
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1 PROJECT |
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2 NAME VERSION FORMAT DATE COMMENT |
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3 K12_MG1655.ftbl 1 101109 modele E coli K12 MG1655 WT avec voies centrales completes et voies biomasse simplifiees |
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4 |
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5 NETWORK |
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6 FLUX_NAME EDUCT_1 EDUCT_2 PRODUCT_1 PRODUCT_2 |
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7 |
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8 // Glycolyse. |
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9 // PPP |
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10 // TCA |
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11 // voies anaplerotiques: pepc. enz malique |
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12 // voie glyoxylate |
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13 // avec pool interne unique de CO2 provenant soit du metabolisme soit de l'exterieur (CO2upt laisse libre) |
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14 // saisie differentielle des substrats marques |
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15 |
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16 |
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17 // Uptake substrats |
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18 |
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19 Glucupt_1 Gluc_1 Glc6P // fehlt bei wolfgang |
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20 #ABCDEF #ABCDEF // fehlt bei wolfgang |
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21 |
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22 Glucupt_U Gluc_U Glc6P // fehlt bei wolfgang |
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23 #ABCDEF #ABCDEF // fehlt bei wolfgang |
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24 |
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25 // CO2upt CO2_ext CO2 // entree de CO2 non marque |
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26 // #A #A // ce flux est a laisser libre |
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27 |
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28 // FTHF0 FTHF_0 FTHF // prise en charge de FTHF non marque |
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29 // #A #A |
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30 |
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31 // FTHF1 FTHF_1 FTHF // prise en charge de FTHF marque |
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32 // #a #a |
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33 |
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34 |
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35 // Embden Meyerhof Parnas Pathway |
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36 |
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37 pgi Glc6P Fru6P |
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38 #ABCDEF #ABCDEF |
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39 |
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40 pfk Fru6P FruBP |
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41 #ABCDEF #ABCDEF |
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42 |
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43 ald FruBP GA3P GA3P |
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44 #ABCDEF #CBA #DEF |
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45 |
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46 // tpi DHAP GA3P |
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47 // #ABC #CBA |
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48 |
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49 pgk GA3P PGA |
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50 #ABC #ABC |
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51 |
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52 eno PGA PEP |
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53 #ABC #ABC |
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54 |
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55 pyk PEP Pyr |
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56 #ABC #ABC |
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57 |
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58 |
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59 // Methylglyoxal Pathway |
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60 |
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61 // mgs DHAP Pyr |
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62 // #ABC #ABC |
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63 |
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64 |
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65 // Pentose Phosphate Pathway |
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66 |
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67 zwf Glc6P Gnt6P |
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68 #ABCDEF #ABCDEF |
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69 |
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70 gnd Gnt6P CO2 Rib5P |
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71 #ABCDEF #A #BCDEF |
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72 |
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73 edd Gnt6P Pyr GA3P |
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74 #ABCDEF #ABC #DEF |
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75 |
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76 // ta Ery4P Fru6P GA3P Sed7P |
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77 // #ABCD #abcdef #def #abcABCD |
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78 |
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79 // tk1 GA3P Sed7P Rib5P Rib5P |
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80 // #ABC #abcdefg #abABC #cdefg |
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81 |
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82 // tk2 GA3P Fru6P Rib5P Ery4P |
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83 // #ABC #abcdef #abABC #cdef |
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84 |
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85 ta GA3P Sed7P Ery4P Fru6P |
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86 #ABC #abcdefg #defg #abcABC |
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87 |
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88 tk1 Rib5P Rib5P GA3P Sed7P |
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89 #ABCDE #abcde #CDE #ABabcde |
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91 tk2 Rib5P Ery4P GA3P Fru6P |
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92 #ABCDE #abcd #CDE #ABabcd |
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95 // Tricarboxylic Acid Cycle |
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97 pdh Pyr AcCoA CO2 |
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98 #ABC #BC #A |
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99 |
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100 citsynth AcCoA OAA ICit |
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101 #AB #abcd #dcbaBA |
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103 idh ICit AKG CO2 |
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104 #ABCDEF #ABCEF #D |
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105 |
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106 akgdh AKG Suc CO2 |
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107 #ABCDE #BCDE #A |
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108 |
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109 fum_a Suc Mal |
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110 #ABCD #ABCD |
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111 |
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112 fum_b Suc Mal |
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113 #ABCD #DCBA |
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114 |
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115 maldh Mal OAA |
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116 #ABCD #ABCD |
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117 |
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118 |
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119 // Glyoxylate Shunt |
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120 |
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121 // gs1 ICit GlyOx Suc |
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122 // #ABCDEF #AB #DCEF |
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123 |
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124 // gs2 GlyOx AcCoA OAA |
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125 // #AB #ab #ABba |
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126 |
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127 |
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128 // Anaplerotic Reactions |
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129 |
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130 ppc PEP CO2 OAA // PEPcarboxylase |
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131 #ABC #a #ABCa |
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132 |
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133 mae Mal Pyr CO2 // enzyme malique |
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134 #ABCD #ABC #D |
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135 |
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136 // pck OAA PEP CO2 // PEP carboxykinase |
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137 // #ABCD #ABC #D |
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138 |
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139 |
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140 // Biosynthetic Pathways |
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141 |
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142 // Glucose-6-Phosphate Family |
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143 |
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144 bs_glc6P Glc6P BM_Glc6P |
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145 #ABCDEF #ABCDEF |
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146 |
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147 // Fructose-6-Phosphate Family |
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148 |
9b03a930b08b
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149 bs_fru6P Fru6P BM_Fru6P // sortie de Fru6P pour biomasse |
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150 #ABCDEF #ABCDEF |
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151 |
9b03a930b08b
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152 // Phosphoglycerate Family |
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153 |
9b03a930b08b
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154 bs_pga PGA BM_PGA |
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155 #ABC #ABC |
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156 |
9b03a930b08b
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157 bs_pga_aux BM_PGA PGA_Aux |
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158 #ABC #ABC |
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159 |
9b03a930b08b
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160 bs_pga1 BM_PGA Ser |
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161 #ABC #ABC |
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162 |
9b03a930b08b
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163 bs_pga1_aux Ser Ser_Aux |
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164 #ABC #ABC |
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165 |
9b03a930b08b
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166 bs_pga2 Ser Cys // ce flux sert de sortie pour PGA hors formation de Gly |
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167 #ABC #ABC |
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168 |
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169 bs_pga2_aux Cys Cys_Aux // ce flux sert de sortie pour PGA hors formation de Gly |
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170 #ABC #ABC |
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171 |
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172 bs_pga3 Ser Gly FTHF // formation de gly pour biomasse |
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173 #ABC #AB #C // ce flux est reversible |
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174 |
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175 bs_pga3_aux Gly Gly_Aux // pour conserver Gly comme metabolite intracellulaire |
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176 #AB #AB |
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177 |
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178 // TrioseP Family |
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179 |
9b03a930b08b
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180 bs_DHAP GA3P Glp // formation glycerolP pour lipides |
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181 #ABC #ABC |
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182 |
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183 // Pyruvate Family |
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184 |
9b03a930b08b
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185 bs_pyr Pyr BM_Pyr |
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186 #ABC #ABC |
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187 |
9b03a930b08b
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188 bs_pyr1 BM_Pyr Ala |
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189 #ABC #ABC |
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190 |
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191 bs_pyr1_aux Ala Ala_Aux // pour conserver Ala comme metabolite intracellulaire |
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192 #ABC #ABC |
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193 |
9b03a930b08b
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194 bs_pyr2 BM_Pyr BM_Pyr AKV CO2 // AKV et Val ont le meme squelette C |
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195 #ABC #abc #ABbcC #a // cette reaction permet d'utiliser eventuellement les donnees obtenues sur Val |
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196 |
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197 bs_pyr4 AKV Val // permet de tenir compte de la sortie de Val |
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198 #ABCDE #ABCDE |
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199 |
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200 bs_pyr4_aux Val Val_Aux // permet de tenir compte de la sortie de Val |
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201 #ABCDE #ABCDE |
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202 |
9b03a930b08b
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203 bs_pyr3 AKV BM_AcCoA Leu CO2 |
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204 #ABCDE #ab #abBCDE #A |
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205 |
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206 bs_pyr3_aux Leu Leu_Aux // pour conserver Leu comme metabolite intracellulaire |
9b03a930b08b
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207 #ABCDEF #ABCDEF |
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208 |
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209 |
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210 // Erythrose-4-Phosphate Family |
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211 |
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212 bs_e4p Ery4P BM_Ery4P // pour utiliser les donnees sur Ery4P |
9b03a930b08b
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213 #ABCD #ABCD |
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214 |
9b03a930b08b
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215 // bs_e4p_aux BM_Ery4P Ery4P_aux // pour utiliser les donnees sur Ery4P |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
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216 // #ABCD #ABCD |
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|
217 |
9b03a930b08b
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|
218 |
9b03a930b08b
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219 // Ribose-5-Phosphate Family |
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220 |
9b03a930b08b
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221 bs_rib5p Rib5P BM_Rib5P // pour utiliser les donnees sur Rib5P |
9b03a930b08b
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|
222 #ABCDE #ABCDE |
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223 |
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224 bs_rib5p1 BM_Rib5P FTHF His // pour utiliser les donnees sur Rib5P |
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225 #ABCDE #a #EDCBAa |
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226 |
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227 bs_rib5p1_aux His His_Aux // sortie pour conserver His comme metabolite intracellulaire |
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228 #ABCDEF #ABCDEF |
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229 |
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230 bs_rib5p2 BM_Rib5P Ri5P_Aux // sortie de Ri5P pour autres besoins que His |
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231 #ABCDE #ABCDE // ce flux est important pour ne pas imposer de fausses contraintes sur FTHF si on considerait His comme seule sortie |
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232 |
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233 |
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234 // Aromatic Amino Acids |
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235 |
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236 bs_pep PEP BM_PEP |
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237 #ABC #ABC |
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238 |
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239 bs_pep1 BM_PEP BM_Ery4P DAHP |
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240 #ABC #abcd #ABCabcd |
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241 |
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242 bs_pep2 BM_PEP DAHP Chor |
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243 #ABC #abcdefg #ABCabcdefg |
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244 |
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245 bs_pep3a Chor Phe CO2 |
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246 #ABCDEFGHIJ #ABCEFGHIJ #D |
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247 |
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248 bs_pep3b Chor Phe CO2 |
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249 #ABCDEFGHIJ #ABCEJIHGF #D |
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250 |
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251 bs_pep3_aux Phe Phe_Aux |
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252 #ABCEFGHIJ #ABCEFGHIJ |
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253 |
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254 bs_pep4a Chor Tyr CO2 |
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255 #ABCDEFGHIJ #ABCEFGHIJ #D |
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256 |
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257 bs_pep4b Chor Tyr CO2 |
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258 #ABCDEFGHIJ #ABCEJIHGF #D |
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259 |
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260 bs_pep4_aux Tyr Tyr_Aux |
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261 #ABCEFGHIJ #ABCEFGHIJ |
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262 |
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263 bs_pep5 BM_PEP PEP_Aux |
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264 #ABC #ABC |
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265 |
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266 bs_pep6 Chor BM_Rib5P Trp PyrCO2 |
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267 #ABCDEFGHIJ #abcde #edcbaJEFGHI #ABCD |
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268 |
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269 bs_pep6_aux Trp Trp_Aux |
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270 #ABCDEFGHIJK #ABCDEFGHIJK |
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271 |
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272 bs_pep7 PyrCO2 Pyr CO2 |
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273 #ABCD #ABC #D |
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274 |
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275 |
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276 // Acetyl-CoA |
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277 |
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278 bs_accoa AcCoA BM_AcCoA |
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279 #AB #AB |
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280 |
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281 bs_accoa_aux BM_AcCoA AcCoA_Aux |
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282 #AB #AB |
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283 |
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284 |
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285 // Alpha-Ketoglutarate Family |
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286 |
9b03a930b08b
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287 bs_akg AKG BM_AKG // Les donnees sur Glu peuvent etre assimilee a AKG |
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288 #ABCDE #ABCDE |
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289 |
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290 bs_akg1 BM_AKG Glu // Les donnees sur Glu peuvent etre assimilee a AKG |
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291 #ABCDE #ABCDE |
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292 |
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293 bs_akg2 Glu Pro // Les donnees sur Glu peuvent etre assimilee a AKG |
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294 #ABCDE #ABCDE |
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295 |
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296 bs_akg3 Glu Gln // Les donnees sur Glu peuvent etre assimilee a AKG |
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297 #ABCDE #ABCDE |
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298 |
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299 bs_akg4 Glu CO2 Arg // Les donnees sur Glu peuvent etre assimilee a AKG |
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300 #ABCDE #a #ABCDEa |
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301 |
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302 bs_akg4_aux Arg Arg_Aux // Les donnees sur Glu peuvent etre assimilee a AKG |
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303 #ABCDEF #ABCDEF |
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304 |
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305 |
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306 // Oxaloacetate Family |
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307 |
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308 bs_oaa OAA BM_OAA |
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309 #ABCD #ABCD |
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310 |
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311 bs_oaa1 BM_OAA Asp |
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312 #ABCD #ABCD |
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313 |
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314 bs_oaa1_aux Asp Asp_Aux |
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315 #ABCD #ABCD |
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316 |
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317 bs_oaa2 Thr BM_Pyr Ile CO2 |
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318 #ABCD #abc #ABbCDc #a |
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319 |
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320 bs_oaa2_aux Ile Ile_Aux |
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321 #ABCDEF #ABCDEF |
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322 |
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323 bs_oaa3a BM_OAA BM_Pyr Lys CO2 |
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324 #ABCD #abc #ABCDcb #a |
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325 |
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326 bs_oaa3b BM_OAA BM_Pyr Lys CO2 |
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327 #ABCD #abc #abcDCB #A |
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328 |
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329 bs_oaa3_aux Lys Lys_Aux |
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330 #ABCDEF #ABCDEF |
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331 |
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332 bs_oaa4 BM_OAA OAA_Aux |
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|
333 #ABCD #ABCD |
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|
334 |
9b03a930b08b
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|
335 bs_oaa5 BM_OAA Thr |
9b03a930b08b
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|
336 #ABCD #ABCD |
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|
337 |
9b03a930b08b
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|
338 bs_oaa5_aux Thr Thr_Aux |
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|
339 #ABCD #ABCD |
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|
340 |
9b03a930b08b
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|
341 bs_oaa6 BM_OAA FTHF Met |
9b03a930b08b
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|
342 #ABCD #a #ABCDa |
9b03a930b08b
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|
343 |
9b03a930b08b
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|
344 bs_oaa6_aux Met Met_Aux |
9b03a930b08b
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|
345 #ABCDE #ABCDE |
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|
346 |
9b03a930b08b
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|
347 bs_oaa7 BM_OAA Asn |
9b03a930b08b
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|
348 #ABCD #ABCD |
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|
349 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
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|
350 bs_oaa7_aux Asn Asn_Aux |
9b03a930b08b
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workflow4metabolomics
parents:
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|
351 #ABCD #ABCD |
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|
352 |
9b03a930b08b
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|
353 |
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|
354 // Flux de sortie |
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|
355 |
9b03a930b08b
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|
356 out_co2 CO2 CO2_out // Sortie de CO2 |
9b03a930b08b
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|
357 #A #A |
9b03a930b08b
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|
358 |
9b03a930b08b
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|
359 out_Ac AcCoA Acetate // Sortie d'acetate |
9b03a930b08b
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|
360 #AB #AB |
9b03a930b08b
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|
361 |
9b03a930b08b
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|
362 out_FTHF FTHF FTHF_out |
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363 #A #A |
9b03a930b08b
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|
364 |
9b03a930b08b
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|
365 FLUXES |
9b03a930b08b
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|
366 NET |
9b03a930b08b
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|
367 NAME FCD VALUE(F/C) ED_WEIGHT LOW(F) INC(F) UP(F) |
9b03a930b08b
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|
368 |
9b03a930b08b
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369 Glucupt_1 F 0.7 //0.807194 |
9b03a930b08b
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|
370 Glucupt_U D |
9b03a930b08b
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workflow4metabolomics
parents:
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|
371 // CO2upt F 0.669589 |
9b03a930b08b
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workflow4metabolomics
parents:
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|
372 // FTHF0 F 0.00224836 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
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|
373 // FTHF1 F 0.001 |
9b03a930b08b
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|
374 |
9b03a930b08b
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|
375 pgi D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
376 pfk D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
377 ald D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
378 // tpi D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
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changeset
|
379 pgk D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
380 eno D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
381 pyk F 1.4 |
9b03a930b08b
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parents:
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|
382 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
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|
383 zwf F 0.2 |
9b03a930b08b
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workflow4metabolomics
parents:
diff
changeset
|
384 gnd F 0.15062 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
385 edd D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
386 ta D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
387 tk1 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
388 tk2 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
389 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
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changeset
|
390 pdh D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
391 citsynth D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
392 idh D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
393 akgdh D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
394 fum_a D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
395 fum_b D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
396 maldh D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
397 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
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|
398 // gs1 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
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|
399 // gs2 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
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|
400 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
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parents:
diff
changeset
|
401 ppc D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
402 mae D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
403 // pck D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
404 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
405 // flux de biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
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parents:
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|
406 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
407 bs_glc6P C 0.0109 // sortie de G6P |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
408 bs_fru6P C 0.0038 // sortie de F6P |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
409 bs_pga C 0.0791 // sortie de PGA pour formation de biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
410 bs_pga_aux D // sortie de PGA pour formation de biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
411 bs_pga1 D // conversion PGA donne ser |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
412 bs_pga1_aux C 0.0109 // conversion PGA donne ser |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
413 bs_pga2 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
414 bs_pga2_aux C 0.0046 // conversion PGA donne Cys |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
415 bs_pga3 D // reaction de synthese de Gly |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
416 bs_pga3_aux C 0.0308 // sortie de Gly |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
417 bs_DHAP C 0.0068 // formation de glycerolP pour lipides |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
418 bs_pyr C 0.1501 // avant : 0.1547 // sortie de Pyr pour formation de biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
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|
419 bs_pyr1 D // formation d'Ala |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
420 bs_pyr1_aux D // sortie d'Ala. correspond aux sorties de Pyr qui ne sont pas associees a Val et Leu |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
421 bs_pyr2 D // synthese d'AKV. consomme 2 Pyr |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
422 bs_pyr4 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
423 bs_pyr4_aux C 0.0213 // sortie correspondant a l'utilisation de Val pour la biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
424 bs_pyr3 D // synthese de Leu (AKV+AcCoA consommes) |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
425 bs_pyr3_aux C 0.0227 // sortie de Leu |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
426 bs_e4p D // sortie d'Ery4p pour biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
427 // bs_e4p_aux C 0 // sortie d'Ery4p pour Trp |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
428 bs_rib5p C 0.0476 // synthese d'His |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
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|
429 bs_rib5p1 D // synthese d'His |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
430 bs_rib5p1_aux C 0.0048 // sortie d'His |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
431 bs_rib5p2 D // sortie de Rib5P autre que His |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
432 bs_pep C 0.0381 // sortie de PEP |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
433 bs_pep1 D // sortie de PEP |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
434 bs_pep2 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
435 bs_pep3a D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
436 bs_pep3b D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
437 bs_pep3_aux C 0.0093 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
438 bs_pep4a D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
439 bs_pep4b D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
440 bs_pep4_aux C 0.0069 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
441 bs_pep5 C 0.0027 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
442 bs_pep6 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
443 bs_pep6_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
444 bs_pep7 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
445 bs_accoa C 0.1565 // sortie d'AcCoA pour biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
446 bs_accoa_aux D // sortie d'AcCoA pour biomasse en dehors de synthese Leu |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
447 bs_akg C 0.0571 // sortie d'AKG |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
448 bs_akg1 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
449 bs_akg2 C 0.0111 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
450 bs_akg3 C 0.0132 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
451 bs_akg4 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
452 bs_akg4_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
453 bs_oaa C 0.0947 // sortie d'OAA pour formation de biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
454 bs_oaa1 D // sortie d'OAA pour Asp |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
455 bs_oaa1_aux C 0.0121 // sortie d'Asp |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
456 bs_oaa2 D // synthese d'Ile |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
457 bs_oaa2_aux C 0.0146 // sortie d'Ile |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
458 bs_oaa3a D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
459 bs_oaa3b D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
460 bs_oaa3_aux C 0.0173 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
461 bs_oaa4 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
462 bs_oaa5 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
463 bs_oaa5_aux C 0.0128 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
464 bs_oaa6 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
465 bs_oaa6_aux C 0.0077 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
466 bs_oaa7 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
467 bs_oaa7_aux C 0.0121 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
468 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
469 // Flux de sortie |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
470 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
471 out_co2 D // sortie de CO2 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
472 out_Ac F 0.213 // sortie d'acetate |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
473 out_FTHF D // sortie de FTHF. a laisser libre pour ne pas imposer de contraintes sur FTHF |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
474 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
475 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
476 XCH |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
477 NAME FCD VALUE(F/C) ED_WEIGHT LOW(F) INC(F) UP(F) |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
478 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
479 Glucupt_1 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
480 Glucupt_U D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
481 // CO2upt D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
482 // FTHF0 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
483 // FTHF1 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
484 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
485 pgi C 0.752386 // 2011-02-22 ssg: was F => often unresolved with --irand option |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
486 pfk C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
487 ald F 0.413926 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
488 // tpi F 0.5 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
489 pgk C 0.984718 // 2011-02-22 ssg: was F => often unresolved with --irand option |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
490 eno F 0.800962 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
491 pyk C 0.0109591 // 2010-10-01 ssg: was F => unresolved if co2 uptake is unlimited |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
492 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
493 zwf C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
494 gnd C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
495 edd C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
496 ta F 0.359468 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
497 tk1 F 0.166316 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
498 tk2 F 2.11559e-03 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
499 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
500 pdh C 0.0322745 // 2010-10-02 ssg: was F, otherwise unsolvable in monte-carlo |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
501 citsynth C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
502 idh C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
503 akgdh C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
504 fum_a F 0.395958 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
505 fum_b D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
506 maldh C 0.647115 //********************************************** C pour analyse de sensibilite, F pour minimisation |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
507 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
508 // gs1 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
509 // gs2 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
510 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
511 ppc F 0.256772 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
512 mae C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
513 // pck C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
514 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
515 bs_glc6P D // sortie de G6P |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
516 bs_fru6P D // sortie de F6P |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
517 bs_pga C 0 // conversion PGA donne Ser |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
518 bs_pga_aux D // conversion PGA donne Ser |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
519 bs_pga1 C 0 // conversion PGA donne Ser |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
520 bs_pga1_aux D // conversion PGA donne Ser |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
521 bs_pga2 C 0 // ser donne Cys. correspond a la sortie de PGA pour biomasse autre que formation Gly |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
522 bs_pga2_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
523 bs_pga3 C 0.011799 // reaction de synthese de Gly. cette reaction est reversible |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
524 bs_pga3_aux D // sortie de Gly |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
525 bs_DHAP D // formation de glycerolP pour lipides |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
526 bs_pyr C 0 // formation d'Ala |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
527 bs_pyr1 C 0 // formation d'Ala |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
528 bs_pyr1_aux D // sortie d'Ala. correspond aux sorties de Pyr qui ne sont pas associees a Val et Ile |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
529 bs_pyr2 C 0 // synthese d'AKV. consomme 2 Pyr |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
530 bs_pyr4 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
531 bs_pyr4_aux D // sortie correspondant a l'utilisation de Val pour la biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
532 bs_pyr3 C 0 // synthese de Leu (AKV+AcCoA consommes) |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
533 bs_pyr3_aux D // sortie de Leu |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
534 bs_e4p C 0 // sortie d'Ery4p |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
535 // bs_e4p_aux D // sortie d'Ery4p pour Trp |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
536 bs_rib5p C 0 // synthese d'His |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
537 bs_rib5p1 C 0 // synthese d'His |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
538 bs_rib5p1_aux D // sortie d'His |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
539 bs_rib5p2 D // sortie de Rib5P autre que His |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
540 bs_accoa C 0 // sortie d'AcCoA pour biomasse |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
541 bs_accoa_aux D // sortie d'AcCoA pour biomasse en dehors de synthese Leu |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
542 bs_pep C 0 // sortie de PEP |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
543 bs_pep1 C 0 // sortie de PEP |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
544 bs_pep2 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
545 bs_pep3a C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
546 bs_pep3b C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
547 bs_pep3_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
548 bs_pep4a C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
549 bs_pep4b C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
550 bs_pep4_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
551 bs_pep5 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
552 bs_pep6 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
553 bs_pep6_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
554 bs_pep7 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
555 bs_akg C 0 // sortie d'AKG |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
556 bs_akg1 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
557 bs_akg2 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
558 bs_akg3 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
559 bs_akg4 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
560 bs_akg4_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
561 bs_oaa C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
562 bs_oaa1 C 0 // sortie d'OAA autres que Met |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
563 bs_oaa1_aux D // sortie d'OAA autres que Met |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
564 bs_oaa2 C 0 // synthese de Met |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
565 bs_oaa2_aux D // sortie de Met |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
566 bs_oaa3a C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
567 bs_oaa3b C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
568 bs_oaa3_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
569 bs_oaa4 D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
570 bs_oaa5 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
571 bs_oaa5_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
572 bs_oaa6 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
573 bs_oaa6_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
574 bs_oaa7 C 0 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
575 bs_oaa7_aux D |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
576 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
577 // Flux de sortie |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
578 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
579 out_co2 D // sortie de CO2 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
580 out_Ac D // sortie d'acetate |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
581 out_FTHF D // sortie de FTHF. a laisser libre pour ne pas imposer de contraintes sur FTHF |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
582 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
583 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
584 EQUALITIES |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
585 NET |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
586 VALUE FORMULA |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
587 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
588 0 fum_a-fum_b // scrambling reaction |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
589 1 Glucupt_1+Glucupt_U |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
590 0 bs_oaa3a-bs_oaa3b |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
591 0 bs_pep3a-bs_pep3b |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
592 0 bs_pep4a-bs_pep4b |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
593 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
594 XCH |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
595 VALUE FORMULA |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
596 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
597 0 fum_a-fum_b |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
598 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
599 INEQUALITIES |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
600 NET |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
601 VALUE COMP FORMULA |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
602 // Inequalities for Input and Output Fluxes are generated automatically |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
603 1 <= pyk |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
604 0.0001 <= edd |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
605 0.0001 <= gnd |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
606 0.0001 <= zwf |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
607 0.0001 <= ppc |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
608 0.0001 <= mae |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
609 // 2 >= CO2upt // 2010-08-18 too high value makes jacobian rank deficient |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
610 XCH |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
611 VALUE COMP FORMULA |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
612 // Inequalities for Input and Output Fluxes are generated automatically |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
613 METAB |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
614 VALUE COMP FORMULA |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
615 // 1.2 >= AKG |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
616 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
617 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
618 FLUX_MEASUREMENTS |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
619 FLUX_NAME VALUE DEVIATION // Val Dev |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
620 out_Ac 0.213 0.0001 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
621 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
622 LABEL_INPUT |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
623 META_NAME ISOTOPOMER VALUE |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
624 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
625 Gluc_U #111111 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
626 #000000 0. |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
627 Gluc_1 #100000 1. |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
628 #000000 0. |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
629 // CO2_ext #0 0.989 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
630 // #1 0.011 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
631 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
632 // FTHF_0 #0 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
633 // FTHF_1 #1 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
634 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
635 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
636 LABEL_MEASUREMENTS |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
637 META_NAME CUM_GROUP VALUE DEVIATION CUM_CONSTRAINTS |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
638 // Example |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
639 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
640 PEAK_MEASUREMENTS |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
641 META_NAME PEAK_NO VALUE_S VALUE_D- VALUE_D+ VALUE_DD VALUE_T DEVIATION_S DEVIATION_D- DEVIATION_D+ DEVIATION_DD/T |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
642 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
643 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
644 MASS_SPECTROMETRY |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
645 META_NAME FRAGMENT WEIGHT VALUE DEVIATION |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
646 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
647 // Deviation fixee a 0.02 // correction inoc 0.062 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
648 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
649 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
650 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
651 Suc 1,2,3,4 1 0.371605319 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
652 2 0.360829749 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
653 3 0.208425325 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
654 4 0.059139607 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
655 // Mal 1,2,3,4 0 0.164619329483 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
656 // 1 0.110072868518 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
657 // 2 0.637801316225333 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
658 // 3 0.0863461044204333 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
659 // 4 0.00116038135315367 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
660 ICit 1,2,3,4,5,6 0 0.131864539419667 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
661 1 0.225857638569 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
662 2 0.256421170949333 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
663 3 0.209230210478667 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
664 4 0.116863585449667 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
665 5 0.0457727744643333 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
666 6 0.0139900806697867 0.02 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
667 PEP 1,2,3 0 0.421359839367667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
668 1 0.358998301162333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
669 2 0.0348521859365667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
670 3 0.184789673534 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
671 PGA 1,2,3 0 0.434335785072667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
672 1 0.352829683224667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
673 2 0.0323479804176 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
674 3 0.180486551285333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
675 FruBP 1,2,3,4,5,6 0 0.0738121029259333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
676 1 0.454450017158667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
677 2 0.160823529969333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
678 3 0.0944468077710667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
679 4 0.105281338489667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
680 5 0.0155016033633 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
681 6 0.0956846003217333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
682 Glc6P 1,2,3,4,5,6 0 0.0160587173349 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
683 1 0.673510772480667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
684 2 0.0930110047641 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
685 3 0.0280359937297 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
686 4 0.0397315614067667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
687 5 0.0145524520950667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
688 6 0.135099498189 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
689 Fru6P 1,2,3,4,5,6 0 0.0235029951295 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
690 1 0.624253565357667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
691 2 0.113068441282333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
692 3 0.0456605631765 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
693 4 0.0516089447155667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
694 5 0.0185881765378333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
695 6 0.123317313800333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
696 Rib5P 1,2,3,4,5 0 0.341615670498667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
697 1 0.25454117519 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
698 2 0.159027180368333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
699 3 0.113789577528667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
700 4 0.0615266612553333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
701 5 0.0694997351590667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
702 Gnt6P 1,2,3,4,5,6 0 0.0249552273874 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
703 1 0.672556163913 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
704 2 0.0866890773125333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
705 3 0.0313987199704333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
706 4 0.0314691889898667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
707 5 0.0138168327362333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
708 6 0.139114789690333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
709 // Ery4P 1,2,3,4 0 0.178453461108 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
710 // 1 0.412398433968333 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
711 // 2 0.273694508221667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
712 // 3 0.116142498670667 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
713 // 4 0.0193110980315 0.01 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
714 METABOLITE_POOLS |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
715 META_NAME META_SIZE |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
716 AKG -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
717 AKV 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
718 AcCoA 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
719 Ala 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
720 Arg 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
721 Asn 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
722 Asp 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
723 BM_AKG 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
724 BM_AcCoA 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
725 BM_Ery4P 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
726 BM_OAA 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
727 BM_PEP 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
728 BM_PGA 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
729 BM_Pyr 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
730 BM_Rib5P 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
731 CO2 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
732 Chor 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
733 Cys 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
734 DAHP 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
735 Ery4P -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
736 FTHF 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
737 Fru6P -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
738 FruBP -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
739 GA3P -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
740 Glc6P 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
741 Glu 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
742 Gly 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
743 Gnt6P -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
744 His 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
745 ICit -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
746 Ile 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
747 Leu 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
748 Lys 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
749 Mal 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
750 Met 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
751 OAA -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
752 PEP -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
753 PGA -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
754 Phe 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
755 Pyr -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
756 PyrCO2 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
757 Rib5P -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
758 Sed7P -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
759 Ser 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
760 Suc -1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
761 Thr 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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|
762 Trp 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
763 Tyr 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
764 Val 1 |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
765 METAB_MEASUREMENTS |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
changeset
|
766 META_NAME VALUE DEVIATION |
9b03a930b08b
"planemo upload commit 8e69ff6919990050909511d8bdfb520c19a4af72"
workflow4metabolomics
parents:
diff
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767 Fru6P 0.4263681348074568 0.01 |
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768 GA3P 0.469998855791378 0.01 |
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769 FruBP 1.860001398406723 0.01 |
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770 PEP 0.1099999780931608 0.01 |
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771 Rib5P 0.01933825682263468 0.01 |
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772 Sed7P 0.05727159999541005 0.01 |
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773 |
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774 OPTIONS |
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775 OPT_NAME OPT_VALUE |
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776 dt 1 |
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777 nsubdiv_dt 4 |
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778 //tmax 10 |
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779 file_labcin e_coli_msen.txt |
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780 commandArgs --noscale --TIMEIT --time_order=2 --zc=0 --clowp 1.e-9 |
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781 optctrl_errx 1.e-3 |
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782 optctrl_maxit 50 |
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783 optctrl_btmaxit 16 |
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784 optctrl_btstart 1 |
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785 optctrl_btfrac 0.5 |
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786 //optctrl_history 1 |
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787 optctrl_adaptbt 1 |
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788 optctrl_monotone 1 |
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789 posttreat_R plot_imass.R |