Mercurial > repos > workflow4metabolomics > influx_si_data_manager

comparison test-data/galaxy_test.netw @ 0:6daf2eaa1509 draft

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planemo upload for repository https://github.com/MetaboHUB-MetaToul-FluxoMet/tools_w4m/tree/main/tools/influx_data_manager commit 6e361ee7b6e2ebc70e1c3033b88e316d0854ff6b
author workflow4metabolomics
date Fri, 09 Feb 2024 08:19:16 +0000
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-1:000000000000 0:6daf2eaa1509
1 # Created by 'ftbl2mtf e_coli.ftbl -o mtf/' at 2022-05-25 17:04:34 CEST +0200
2 Glucupt_1: Gluc_1 (ABCDEF) -> Glc6P (ABCDEF)
3 Glucupt_U: Gluc_U (ABCDEF) -> Glc6P (ABCDEF)
4 pgi: Glc6P (ABCDEF) <-> Fru6P (ABCDEF)
5 pfk: Fru6P (ABCDEF) -> FruBP (ABCDEF)
6 ald: FruBP (ABCDEF) <-> GA3P (CBA) + GA3P (DEF)
7 pgk: GA3P (ABC) <-> PGA (ABC)
8 eno: PGA (ABC) <-> PEP (ABC)
9 pyk: PEP (ABC) <-> Pyr (ABC)
10 zwf: Glc6P (ABCDEF) -> Gnt6P (ABCDEF)
11 gnd: Gnt6P (ABCDEF) -> CO2 (A) + Rib5P (BCDEF)
12 edd: Gnt6P (ABCDEF) -> Pyr (ABC) + GA3P (DEF)
13 ta: GA3P (ABC) + Sed7P (abcdefg) <-> Ery4P (defg) + Fru6P (abcABC)
14 tk1: Rib5P (ABCDE) + Rib5P (abcde) <-> GA3P (CDE) + Sed7P (ABabcde)
15 tk2: Rib5P (ABCDE) + Ery4P (abcd) <-> GA3P (CDE) + Fru6P (ABabcd)
16 pdh: Pyr (ABC) <-> AcCoA (BC) + CO2 (A)
17 citsynth: AcCoA (AB) + OAA (abcd) -> ICit (dcbaBA)
18 idh: ICit (ABCDEF) -> AKG (ABCEF) + CO2 (D)
19 akgdh: AKG (ABCDE) -> Suc (BCDE) + CO2 (A)
20 fum_a: Suc (ABCD) <-> Mal (ABCD)
21 fum_b: Suc (ABCD) <-> Mal (DCBA)
22 maldh: Mal (ABCD) <-> OAA (ABCD)
23 ppc: PEP (ABC) + CO2 (a) <-> OAA (ABCa)
24 mae: Mal (ABCD) -> Pyr (ABC) + CO2 (D)
25 bs_glc6P: Glc6P (ABCDEF) -> BM_Glc6P (ABCDEF)
26 bs_fru6P: Fru6P (ABCDEF) -> BM_Fru6P (ABCDEF)
27 bs_pga: PGA (ABC) -> BM_PGA (ABC)
28 bs_pga_aux: BM_PGA (ABC) -> PGA_Aux (ABC)
29 bs_pga1: BM_PGA (ABC) -> Ser (ABC)
30 bs_pga1_aux: Ser (ABC) -> Ser_Aux (ABC)
31 bs_pga2: Ser (ABC) -> Cys (ABC)
32 bs_pga2_aux: Cys (ABC) -> Cys_Aux (ABC)
33 bs_pga3: Ser (ABC) <-> Gly (AB) + FTHF (C)
34 bs_pga3_aux: Gly (AB) -> Gly_Aux (AB)
35 bs_DHAP: GA3P (ABC) -> Glp (ABC)
36 bs_pyr: Pyr (ABC) -> BM_Pyr (ABC)
37 bs_pyr1: BM_Pyr (ABC) -> Ala (ABC)
38 bs_pyr1_aux: Ala (ABC) -> Ala_Aux (ABC)
39 bs_pyr2: BM_Pyr (ABC) + BM_Pyr (abc) -> AKV (ABbcC) + CO2 (a)
40 bs_pyr4: AKV (ABCDE) -> Val (ABCDE)
41 bs_pyr4_aux: Val (ABCDE) -> Val_Aux (ABCDE)
42 bs_pyr3: AKV (ABCDE) + BM_AcCoA (ab) -> Leu (abBCDE) + CO2 (A)
43 bs_pyr3_aux: Leu (ABCDEF) -> Leu_Aux (ABCDEF)
44 bs_e4p: Ery4P (ABCD) -> BM_Ery4P (ABCD)
45 bs_rib5p: Rib5P (ABCDE) -> BM_Rib5P (ABCDE)
46 bs_rib5p1: BM_Rib5P (ABCDE) + FTHF (a) -> His (EDCBAa)
47 bs_rib5p1_aux: His (ABCDEF) -> His_Aux (ABCDEF)
48 bs_rib5p2: BM_Rib5P (ABCDE) -> Ri5P_Aux (ABCDE)
49 bs_pep: PEP (ABC) -> BM_PEP (ABC)
50 bs_pep1: BM_PEP (ABC) + BM_Ery4P (abcd) -> DAHP (ABCabcd)
51 bs_pep2: BM_PEP (ABC) + DAHP (abcdefg) -> Chor (ABCabcdefg)
52 bs_pep3a: Chor (ABCDEFGHIJ) -> Phe (ABCEFGHIJ) + CO2 (D)
53 bs_pep3b: Chor (ABCDEFGHIJ) -> Phe (ABCEJIHGF) + CO2 (D)
54 bs_pep3_aux: Phe (ABCEFGHIJ) -> Phe_Aux (ABCEFGHIJ)
55 bs_pep4a: Chor (ABCDEFGHIJ) -> Tyr (ABCEFGHIJ) + CO2 (D)
56 bs_pep4b: Chor (ABCDEFGHIJ) -> Tyr (ABCEJIHGF) + CO2 (D)
57 bs_pep4_aux: Tyr (ABCEFGHIJ) -> Tyr_Aux (ABCEFGHIJ)
58 bs_pep5: BM_PEP (ABC) -> PEP_Aux (ABC)
59 bs_pep6: Chor (ABCDEFGHIJ) + BM_Rib5P (abcde) -> Trp (edcbaJEFGHI) + PyrCO2 (ABCD)
60 bs_pep6_aux: Trp (ABCDEFGHIJK) -> Trp_Aux (ABCDEFGHIJK)
61 bs_pep7: PyrCO2 (ABCD) -> Pyr (ABC) + CO2 (D)
62 bs_accoa: AcCoA (AB) -> BM_AcCoA (AB)
63 bs_accoa_aux: BM_AcCoA (AB) -> AcCoA_Aux (AB)
64 bs_akg: AKG (ABCDE) -> BM_AKG (ABCDE)
65 bs_akg1: BM_AKG (ABCDE) -> Glu (ABCDE)
66 bs_akg2: Glu (ABCDE) -> Pro (ABCDE)
67 bs_akg3: Glu (ABCDE) -> Gln (ABCDE)
68 bs_akg4: Glu (ABCDE) + CO2 (a) -> Arg (ABCDEa)
69 bs_akg4_aux: Arg (ABCDEF) -> Arg_Aux (ABCDEF)
70 bs_oaa: OAA (ABCD) -> BM_OAA (ABCD)
71 bs_oaa1: BM_OAA (ABCD) -> Asp (ABCD)
72 bs_oaa1_aux: Asp (ABCD) -> Asp_Aux (ABCD)
73 bs_oaa2: Thr (ABCD) + BM_Pyr (abc) -> Ile (ABbCDc) + CO2 (a)
74 bs_oaa2_aux: Ile (ABCDEF) -> Ile_Aux (ABCDEF)
75 bs_oaa3a: BM_OAA (ABCD) + BM_Pyr (abc) -> Lys (ABCDcb) + CO2 (a)
76 bs_oaa3b: BM_OAA (ABCD) + BM_Pyr (abc) -> Lys (abcDCB) + CO2 (A)
77 bs_oaa3_aux: Lys (ABCDEF) -> Lys_Aux (ABCDEF)
78 bs_oaa4: BM_OAA (ABCD) -> OAA_Aux (ABCD)
79 bs_oaa5: BM_OAA (ABCD) -> Thr (ABCD)
80 bs_oaa5_aux: Thr (ABCD) -> Thr_Aux (ABCD)
81 bs_oaa6: BM_OAA (ABCD) + FTHF (a) -> Met (ABCDa)
82 bs_oaa6_aux: Met (ABCDE) -> Met_Aux (ABCDE)
83 bs_oaa7: BM_OAA (ABCD) -> Asn (ABCD)
84 bs_oaa7_aux: Asn (ABCD) -> Asn_Aux (ABCD)
85 out_co2: CO2 (A) -> CO2_out (A)
86 out_Ac: AcCoA (AB) -> Acetate (AB)
87 out_FTHF: FTHF (A) -> FTHF_out (A)