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planemo upload for repository https://github.com/your_org_or_user/tools-metabolomics commit 3dd90b60510fa72eb8351464ec5d5883b0b6222a
author workflow4metabolomics
date Fri, 04 Jul 2025 16:31:19 +0000
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860907bf0e0f planemo upload for repository https://github.com/your_org_or_user/tools-metabolomics commit 3dd90b60510fa72eb8351464ec5d5883b0b6222a
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1 Intensity check
860907bf0e0f planemo upload for repository https://github.com/your_org_or_user/tools-metabolomics commit 3dd90b60510fa72eb8351464ec5d5883b0b6222a
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2 =======
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4 Metadata
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5 -----------
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7 * **@name**: Intensity check
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8 * **@version**: 2.0.0
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9 * **@authors**: Original code: Anthony Fernandes (PFEM - INRA) - Maintainer: Melanie Petera (PFEM - INRAE - MetaboHUB)
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10 * **@contributors**: Wrapper update/refactoring: Helge Hecht
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11 * **@init date**: 2018, September
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12 * **@main usage**: This tool computes some statistical measures, number of missing values and mean fold change.
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860907bf0e0f planemo upload for repository https://github.com/your_org_or_user/tools-metabolomics commit 3dd90b60510fa72eb8351464ec5d5883b0b6222a
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15 Context
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16 -----------
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18 This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance statistical tools.
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19 W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data.
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21 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research.
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22 Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
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25 Configuration
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26 -----------
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28 ### Requirement:
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29 * R software: version > 3.0.0 recommended
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30 * Specific R libraries: 'argparse' (for the Galaxy wrapper only)
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33 Technical description
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34 -----------
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36 Main files:
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38 - Script_intensity_check.R: R function (core script)
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39 - wrapper_intensity_check.R: R script to link the main R function to inputs
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40 - xml_intensity_check.xml: XML wrapper (interface for Galaxy)
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43 Services provided
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44 -----------
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46 * Help and support: https://community.france-bioinformatique.fr/c/workflow4metabolomics/10
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49 License
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50 -----------
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52 * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1)