R (>= 2.10), methods, BiocGenerics, Biobase

Encapsulated Classes with Reference Semantics

person("Winston", "Chang", role = c("aut", "cre"), email = "winston@stdout.org")

Creates classes with reference semantics, similar to R's built-in
    reference classes. Compared to reference classes, R6 classes are simpler
    and lighter-weight, and they are not built on S4 classes so they do not
    require the methods package. These classes allow public and private
    members, and they support inheritance, even when the classes are defined in
    different packages.

knitr, microbenchmark, pryr, testthat, ggplot2, scales

c(person("Baptiste", "Auguie",
    email = "baptiste.auguie@gmail.com",
    role = c("aut", "cre")), person("Anton", "Antonov",
    email = "tonytonov@gmail.com",
    role = c("ctb")))

Miscellaneous Functions for "Grid" Graphics

Provides a number of user-level functions to work with "grid"
    graphics, notably to arrange multiple grid-based plots on a page, and draw
    tables.

gtable, grid, grDevices, graphics, utils

Baptiste Auguie [aut, cre],
  Anton Antonov [ctb]

A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R
    using Literate Programming techniques.

evaluate (>= 0.10), highr, markdown, stringr (>= 0.6), yaml
(>= 2.1.19), methods, xfun, tools

formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), magick,
png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1),
showtext, tibble, styler

Package vignettes based on R Markdown v2 or
reStructuredText require Pandoc (http://pandoc.org). The
function rst2pdf() require rst2pdf
(https://github.com/rst2pdf/rst2pdf).

'block.R' 'cache.R' 'utils.R' 'citation.R' 'hooks-html.R'
'plot.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R'
'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R'
'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R'
'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R'
'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R'
'template.R' 'utils-base64.R' 'utils-conversion.R'
'utils-rd2html.R' 'utils-sweave.R' 'utils-upload.R'
'utils-vignettes.R' 'zzz.R'