AllClasses.R AllGenerics.R vsn2.R vsnLogLik.R justvsn.R
methods-vsnInput.R methods-vsn.R methods-vsn2.R
methods-predict.R RGList_to_NChannelSet.R meanSdPlot-methods.R
plotLikelihood.R normalize.AffyBatch.vsn.R sagmbSimulateData.R
zzz.R

Quantitative Analysis of Mass Spectrometry Data

c(person("Sebastian", "Gibb", role=c("aut", "cre"),
        email="mail@sebastiangibb.de",
        comment=c(ORCID="0000-0001-7406-4443")), person("Korbinian",
        "Strimmer", role="ths"))

A complete analysis pipeline for matrix-assisted laser
        desorption/ionization-time-of-flight (MALDI-TOF) and other
        two-dimensional mass spectrometry data. In addition to commonly
        used plotting and processing methods it includes distinctive
        features, namely baseline subtraction methods such as
        morphological filters (TopHat) or the statistics-sensitive
        non-linear iterative peak-clipping algorithm (SNIP), peak
        alignment using warping functions, handling of replicated
        measurements as well as allowing spectra with different
        resolutions.

Sebastian Gibb [aut, cre] (<https://orcid.org/0000-0001-7406-4443>),
  Korbinian Strimmer [ths]

A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R
    using Literate Programming techniques.

evaluate (>= 0.10), highr, markdown, stringr (>= 0.6), yaml
(>= 2.1.19), methods, xfun, tools

formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, reticulate (>= 1.4), JuliaCall (>= 0.11.1), magick,
png, jpeg, gifski, xml2 (>= 1.2.0), httr, DBI (>= 0.4-1),
showtext, tibble, styler

Package vignettes based on R Markdown v2 or
reStructuredText require Pandoc (http://pandoc.org). The
function rst2pdf() require rst2pdf
(https://github.com/rst2pdf/rst2pdf).

'block.R' 'cache.R' 'utils.R' 'citation.R' 'hooks-html.R'
'plot.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R'
'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R'
'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R'
'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R'
'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R'
'template.R' 'utils-base64.R' 'utils-conversion.R'
'utils-rd2html.R' 'utils-sweave.R' 'utils-upload.R'
'utils-vignettes.R' 'zzz.R'