Finds the k nearest neighbours for every point in a given dataset
    in O(N log N) time using Arya and Mount's ANN library (v1.1.3). There is
    support for approximate as well as exact searches, fixed radius searches
    and 'bd' as well as 'kd' trees. The distance is computed using the L2
    (Euclidean) metric. Please see package 'RANN.L1' for the same
    functionality using the L1 (Manhattan, taxicab) metric.

Frank E Harrell Jr <f.harrell@vanderbilt.edu>, with
  contributions from Charles Dupont and many others.

Frank E Harrell Jr <f.harrell@vanderbilt.edu>

lattice, survival (>= 2.40-1), Formula, ggplot2 (>= 2.2)

methods, latticeExtra, cluster, rpart, nnet, acepack, foreign,
gtable, grid, gridExtra, data.table, htmlTable (>= 1.11.0),
viridis, htmltools, base64enc

chron, rms, mice, tables, knitr, ff, ffbase, plotly (>=
4.5.6), rlang

Contains many functions useful for data
	analysis, high-level graphics, utility operations, functions for
	computing sample size and power, importing and annotating datasets,
	imputing missing values, advanced table making, variable clustering,
	character string manipulation, conversion of R objects to LaTeX and html code,
	and recoding variables.

Infrastructure for manipulating intervals on sequences

Provides efficient low-level and highly reusable S4
	classes for storing, manipulating and aggregating over annotated
	ranges of integers. Implements an algebra of range operations,
	including efficient algorithms for finding overlaps and nearest
	neighbors. Defines efficient list-like classes for storing,
	transforming and aggregating large grouped data, i.e., collections
	of atomic vectors and DataFrames.

R (>= 3.1.0), methods, utils, stats, BiocGenerics (>= 0.25.3),
S4Vectors (>= 0.19.11)

XVector, GenomicRanges, Rsamtools, GenomicAlignments,
GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,
RUnit, BiocStyle

range-squeezers.R Vector-class-leftovers.R
List-class-leftovers.R DataFrame-utils.R DataFrameList-class.R
DataFrameList-utils.R AtomicList-class.R AtomicList-utils.R
Ranges-and-RangesList-classes.R IPosRanges-class.R
IPosRanges-comparison.R IntegerRangesList-class.R
IRanges-class.R IRanges-constructor.R IRanges-utils.R
Rle-class-leftovers.R IPos-class.R subsetting-utils.R
Grouping-class.R Views-class.R RleViews-class.R
RleViews-utils.R extractList.R seqapply.R multisplit.R
SimpleGrouping-class.R IRangesList-class.R IPosList-class.R
ViewsList-class.R RleViewsList-class.R RleViewsList-utils.R
RangedSelection-class.R MaskCollection-class.R read.Mask.R
CompressedList-class.R CompressedList-comparison.R
CompressedHitsList-class.R CompressedDataFrameList-class.R
CompressedAtomicList-class.R CompressedGrouping-class.R
CompressedRangesList-class.R RangedData-class.R
RangedData-utils.R Hits-class-leftovers.R NCList-class.R
findOverlaps-methods.R windows-methods.R intra-range-methods.R
inter-range-methods.R reverse-methods.R coverage-methods.R
cvg-methods.R slice-methods.R setops-methods.R
nearest-methods.R cbind-Rle-methods.R tile-methods.R
extractListFragments.R zzz.R