# HG changeset patch
# User workflow4metabolomics
# Date 1588835359 14400
# Node ID ba609408eee900dbfcf9b8217e9dd3d0a34d06b0
# Parent  96debae917e469b9f4817e8cb4232ff986ebbcb6
planemo upload for repository https://github.com/workflow4metabolomics/metaMS commit eb45457830f9d220bcb845acf71bffb50038a4c7-dirty

diff -r 96debae917e4 -r ba609408eee9 macros.xml
--- a/macros.xml	Fri Sep 06 06:12:08 2019 -0400
+++ b/macros.xml	Thu May 07 03:09:19 2020 -0400
@@ -2,6 +2,8 @@
 
 <macros>
 
+    <token name="@TOOL_VERSION@">1.22.0</token>
+
 	<xml name="stdio">
         <stdio>
             <exit_code range="1" level="fatal" />
@@ -10,8 +12,8 @@
 
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.18.1">bioconductor-metams</requirement>
-            <requirement type="package" version="1.1_4">r-batch</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">bioconductor-metams</requirement>
+            <requirement type="package" version="1.1_5">r-batch</requirement>
             <yield />
         </requirements>
     </xml>
@@ -75,4 +77,31 @@
         #end if
 	</token>
 
+    <token name="@HELP_AUTHORS@">
+        .. class:: infomark
+
+        **Author(s)**  Ron Wehrens (ron.wehrens@gmail.com), Georg Weingart, Fulvio Mattivi
+
+        .. class:: infomark
+
+        **Galaxy wrapper and scripts developpers** Guitton Yann LABERCA yann.guitton@oniris-nantes.fr and Saint-Vanne Julien julien.saint-vanne@sb-roscoff.fr
+
+        .. class:: infomark
+
+        **Please cites**  
+ 
+            metaMS : Wehrens, R.; Weingart, G.; Mattivi, F. Journal of Chromatography B.
+
+            xcms :   Smith, C. A.; Want, E. J.; O’Maille, G.; Abagyan, R.; Siuzdak, G. Anal. Chem. 2006, 78, 779–787.
+
+            CAMERA :   Kuhl, C.; Tautenhahn, R.; Böttcher, C.; Larson, T. R.; Neumann, S. Analytical Chemistry 2012, 84, 283–289.
+    </token>
+
+    <xml name="citation">
+        <citations>
+            <citation type="doi">10.1016/j.jchromb.2014.02.051</citation>
+            <citation type="doi">10.1093/bioinformatics/btu813</citation>
+        </citations>
+    </xml>
+    
 </macros>
\ No newline at end of file
diff -r 96debae917e4 -r ba609408eee9 metaMS_plot.xml
--- a/metaMS_plot.xml	Fri Sep 06 06:12:08 2019 -0400
+++ b/metaMS_plot.xml	Thu May 07 03:09:19 2020 -0400
@@ -1,4 +1,4 @@
- <tool id="metams_plot" name="metaMS.plot" version="1.0.0">
+ <tool id="metams_plot" name="metaMS.plot" version="@TOOL_VERSION@+galaxy0">
 
     <description>GC-MS data preprocessing using metaMS package</description>
 
@@ -119,30 +119,9 @@
 -->
     </tests>
     
-    <help>
-
-<!--
-TODO : Add test on EICs (problem with gs not found whereas I added pip install ghostscript and bgs in .travis.yml)
--->
-
-.. class:: infomark
-
-**Author(s)**  Ron Wehrens (ron.wehrens@gmail.com), Georg Weingart, Fulvio Mattivi
-
-.. class:: infomark
+    <help><![CDATA[
 
-**Galaxy wrapper and scripts developpers** Guitton Yann LABERCA yann.guitton@oniris-nantes.fr and Saint-Vanne Julien julien.saint-vanne@sb-roscoff.fr
-
-.. class:: infomark
-
-**Please cites**  
- 
- metaMS : Wehrens, R.; Weingart, G.; Mattivi, F. Journal of Chromatography B.
-
- xcms :   Smith, C. A.; Want, E. J.; O’Maille, G.; Abagyan, R.; Siuzdak, G. Anal. Chem. 2006, 78, 779–787.
-
-
----------------------------------------------------
+@HELP_AUTHORS@
 
 ====================
 metaMS_plot
@@ -256,11 +235,8 @@
 
 - NEW: new tool extract from previous metaMS_runGC tool
 
-    </help>
+    ]]></help>
 
-    <citations>
-        <citation type="doi">10.1016/j.jchromb.2014.02.051</citation>
-        <citation type="doi">10.1093/bioinformatics/btu813</citation>
-    </citations>
-
+    <expand macro="citation" />
+    
 </tool>
\ No newline at end of file
diff -r 96debae917e4 -r ba609408eee9 static/images/workflow_metaMS_plot.jpg
Binary file static/images/workflow_metaMS_plot.jpg has changed
diff -r 96debae917e4 -r ba609408eee9 static/images/workflow_metaMS_plot.png
Binary file static/images/workflow_metaMS_plot.png has changed