Mercurial > repos > xiaoyi-cao > bedtools_annotate
comparison annotateBedWrapper.xml @ 2:f878353c82d0 draft default tip
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| author | xiaoyi-cao |
|---|---|
| date | Sun, 02 Dec 2012 15:54:24 -0500 |
| parents | bfb51c7bfa8a |
| children |
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| 1:bfb51c7bfa8a | 2:f878353c82d0 |
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| 1 <tool id="annotateBed" name="Annotates"> | 1 <tool id="annotateBed" name="Annotates" version="0.0.1"> |
| 2 | 2 |
| 3 <description> the depth & breadth of coverage of features from multiple files | 3 <description> the depth & breadth of coverage of features from multiple files |
| 4 </description> | 4 </description> |
| 5 | 5 |
| 6 <requirements> | 6 <requirements> |
| 29 <param name="countflag" type="select" label="What to report in the output: "> | 29 <param name="countflag" type="select" label="What to report in the output: "> |
| 30 <option value="-counts" selected="true">the count of features in each file that overlap the regions</option> | 30 <option value="-counts" selected="true">the count of features in each file that overlap the regions</option> |
| 31 <option value="">fraction of the region covered by each feature</option> | 31 <option value="">fraction of the region covered by each feature</option> |
| 32 <option value="-both">Report the counts followed by the % coverage</option> | 32 <option value="-both">Report the counts followed by the % coverage</option> |
| 33 </param> | 33 </param> |
| 34 <repeat name="annotateColumn" title="Column"> | 34 <repeat name="annotateColumn" title="Feature"> |
| 35 <param name="colname" type="text" label="Feature name" /> | 35 <param name="colname" type="text" label="Feature name" /> |
| 36 <param name="colfile" type="data" format="bed" label="Feature file to annotate for the column" /> | 36 <param name="colfile" type="data" format="bed" label="Feature file to annotate for the column" /> |
| 37 </repeat> | 37 </repeat> |
| 38 | 38 |
| 39 </inputs> | 39 </inputs> |