comparison macros.xml @ 7:baba452d0613 draft

"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hexrd commit c6c9ce811a27cdee735c2eeac9f6a29f95d9ae90"

6:164e881c40e2

<macros>
    <token name="@TOOL_VERSION@">0.8.12</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">21.09</token>
    <xml name="requirements">
        <requirements>
        <requirement type="package" version="@TOOL_VERSION@">hexrd</requirement>
            <yield/>

                <param name="image_panel_table" type="data" format="tabular" label="Image panel assignment table">
                    <help>A 2-column table:image dataset name   detector panel name</help>
                </param>
            </when>
        </conditional>
        <param name="instrument" type="data" format="hexrd.yml" label="instrument"/>
        <param name="material" type="data" format="hexrd.materials.h5" label="material"/>
        <param name="active_material" type="select" label="active material name">
            <options>
                <filter type="data_meta" ref="material" key="materials"/>
            </options>

                            <param name="overlap" type="float" value="0.1" min="0" max="1.0" label="blob_log overlap"/>
                        </when>
                    </conditional>
                </when>
                <when value="use_quaternion_grid">
                    <param name="quaternion_grid" type="data" format="hexrd.npz" label="quaterion grid file"/>
                </when>
            </conditional>
        </section>
        <section name="omega" title="Omega" expanded="true">
            <param name="omega_tolerance" type="float" value="1.0" min="0" max="10.0" label="omega tolerance"/>

]]></token>

    <xml name="fit_grains_config">
        <expand macro="common_config" token_multiple_inputs="true"/>
        <param name="ome_map" type="data" format="hexrd.eta_ome.npz" label="analysis eta-ome_maps.npz from find_orientations"/>
        <param name="accepted_orientations" type="data" format="hexrd.accepted_orientations" label="accepted_orientations from find_orientations"/>
        <param name="grains_estimate" type="data" format="tabular" label="grains.out from find_orientations"/>
        <param name="do_fit" type="boolean" truevalue="true" falsevalue="false" checked="true" label="fit grains" help="if false, extracts grains but doesn't fit"/>
        <param name="npdiv" type="integer" value="2" min="1" label="number of polar pixel grid subdivisions"/>
        <param name="threshold" type="integer" value="25" min="1" label="threshold"/>
        <section name="tolerance" title="Fit Grain Tolerance" expanded="true">

7:baba452d0613

<macros>
    <token name="@TOOL_VERSION@">0.8.12</token>
    <token name="@VERSION_SUFFIX@">1</token>
    <token name="@PROFILE@">21.09</token>
    <xml name="requirements">
        <requirements>
        <requirement type="package" version="@TOOL_VERSION@">hexrd</requirement>
            <yield/>

                <param name="image_panel_table" type="data" format="tabular" label="Image panel assignment table">
                    <help>A 2-column table:image dataset name   detector panel name</help>
                </param>
            </when>
        </conditional>
        <param name="instrument" type="data" format="yaml" label="instrument"/>
        <param name="material" type="data" format="hexrd.materials.h5" label="material"/>
        <param name="active_material" type="select" label="active material name">
            <options>
                <filter type="data_meta" ref="material" key="materials"/>
            </options>

                            <param name="overlap" type="float" value="0.1" min="0" max="1.0" label="blob_log overlap"/>
                        </when>
                    </conditional>
                </when>
                <when value="use_quaternion_grid">
                    <param name="quaternion_grid" type="data" format="npz" label="quaterion grid file"/>
                </when>
            </conditional>
        </section>
        <section name="omega" title="Omega" expanded="true">
            <param name="omega_tolerance" type="float" value="1.0" min="0" max="10.0" label="omega tolerance"/>

]]></token>

    <xml name="fit_grains_config">
        <expand macro="common_config" token_multiple_inputs="true"/>
        <param name="ome_map" type="data" format="hexrd.eta_ome.npz" label="analysis eta-ome_maps.npz from find_orientations"/>
        <param name="accepted_orientations" type="data" format="tabular" label="accepted_orientations from find_orientations"/>
        <param name="grains_estimate" type="data" format="tabular" label="grains.out from find_orientations"/>
        <param name="do_fit" type="boolean" truevalue="true" falsevalue="false" checked="true" label="fit grains" help="if false, extracts grains but doesn't fit"/>
        <param name="npdiv" type="integer" value="2" min="1" label="number of polar pixel grid subdivisions"/>
        <param name="threshold" type="integer" value="25" min="1" label="threshold"/>
        <section name="tolerance" title="Fit Grain Tolerance" expanded="true">