Mercurial > repos > xuebing > bed_overlap_significance
comparison bed_overlap_significance.xml @ 3:94e3d9f4ebaf default tip
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| author | xuebing |
|---|---|
| date | Sat, 31 Mar 2012 20:42:54 -0400 |
| parents | bda15bf10ab4 |
| children |
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| 2:37522c89872f | 3:94e3d9f4ebaf |
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| 1 <tool id="intersect_significance" name="intersect_significance"> | 1 <tool id="bed_overlap_significance" name="bed_overlap_significance"> |
| 2 <description>significance of two interval sets overlapping</description> | 2 <description>significance of two interval sets overlapping</description> |
| 3 <command interpreter="python"> bed_overlap_significance.py $fileA $fileB $outfile $outplot $outshuffle $n $genome $fraction $reciprocal </command> | 3 <command interpreter="python"> bed_overlap_significance.py $fileA $fileB $outfile $outplot $outshuffle $n $genome $fraction $reciprocal </command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param name="fileA" type="data" format="interval" label="Return intervals in file A" /> | 5 <param name="fileA" type="data" format="interval" label="Return intervals in file A" /> |
| 6 <param name="fileB" type="data" format="interval" label="that overlap with intervals in file B" /> | 6 <param name="fileB" type="data" format="interval" label="that overlap with intervals in file B" /> |