Mercurial > repos > xuebing > bed_sort_with_header
comparison bed_sort_with_header.xml @ 1:9ac963d8d5a3 default tip
Uploaded
| author | xuebing |
|---|---|
| date | Sat, 31 Mar 2012 23:24:58 -0400 |
| parents | 4f17738e0254 |
| children |
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| 0:4f17738e0254 | 1:9ac963d8d5a3 |
|---|---|
| 3 <command> head -n $skip $input > $output | 3 <command> head -n $skip $input > $output |
| 4 && tail -n+`expr $skip + 1` $input | sort -k1,1 -k2,2g >> $output | 4 && tail -n+`expr $skip + 1` $input | sort -k1,1 -k2,2g >> $output |
| 5 </command> | 5 </command> |
| 6 <inputs> | 6 <inputs> |
| 7 <param name="input" type="data" format="bed" label="Input interval file"/> | 7 <param name="input" type="data" format="bed" label="Input interval file"/> |
| 8 <param name="skip" type="integer" value="0" label="top lines to skip" help="output directly, not sorted"/> | 8 <param name="skip" type="integer" value="1" label="top lines to skip" help="output directly, not sorted"/> |
| 9 </inputs> | 9 </inputs> |
| 10 <outputs> | 10 <outputs> |
| 11 <data format="bed" name="output" /> | 11 <data format="bed" name="output" /> |
| 12 </outputs> | 12 </outputs> |
| 13 <help> | 13 <help> |