Mercurial > repos > xuebing > bed_to_bigwig
comparison bed_to_bigwig.xml @ 2:c5bf1ec88e4e
Uploaded
| author | xuebing |
|---|---|
| date | Sat, 31 Mar 2012 14:04:50 -0400 |
| parents | abb55c0cfe38 |
| children |
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| 1:ccd3fd69df1a | 2:c5bf1ec88e4e |
|---|---|
| 18 </when> | 18 </when> |
| 19 <when value="bam"> | 19 <when value="bam"> |
| 20 <param name="input" type="data" format="bam" label="Input file"/> | 20 <param name="input" type="data" format="bam" label="Input file"/> |
| 21 </when> | 21 </when> |
| 22 </conditional> | 22 </conditional> |
| 23 <param name="genome" type="select" label="Select genome"> | 23 <param name="genome" type="select" label="Select chromsome size file" > |
| 24 <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm9.genome" selected="true">mm9</option> | 24 <options from_file="chrsize.loc"> |
| 25 <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm8.genome">mm8</option> | 25 <column name="name" index="0"/> |
| 26 <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg18.genome">hg18</option> | 26 <column name="value" index="1"/> |
| 27 <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg19.genome">hg19</option> | 27 </options> |
| 28 </param> | 28 </param> |
| 29 | |
| 29 <param name="sorted" label="Check if the input is sorted" type="boolean" truevalue="sorted" falsevalue="none" checked="False"/> | 30 <param name="sorted" label="Check if the input is sorted" type="boolean" truevalue="sorted" falsevalue="none" checked="False"/> |
| 30 <param name="split" label="Split junctions" help="Treat 'split' BAM or BED12 entries as distinct BED intervals." type="boolean" truevalue="-split" falsevalue="" checked="False"/> | 31 <param name="split" label="Split junctions" help="Treat 'split' BAM or BED12 entries as distinct BED intervals." type="boolean" truevalue="-split" falsevalue="" checked="False"/> |
| 31 </inputs> | 32 </inputs> |
| 32 <outputs> | 33 <outputs> |
| 33 <data format="txt" name="log" label="makebigwig LOG" /> | 34 <data format="txt" name="log" label="makebigwig LOG" /> |