Mercurial > repos > xuebing > memelogo

changeset 0:28c6068ead34 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author xuebing
date Sat, 31 Mar 2012 21:43:14 -0400
parents
children
files memelogo.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/memelogo.xml	Sat Mar 31 21:43:14 2012 -0400
@@ -0,0 +1,26 @@
+<tool id="memelogo" name="motif logo">
+  <description>of MEME motif</description>
+  <command>ceqlogo -i $input -o tmp.eps -t $title -x ''  
+    &amp;&amp; ps2pdf -dEPSCrop tmp.eps $output
+  </command>
+  <inputs>
+     <param name="input" type="data" format="txt" label="MEME motif file"/>
+     <param name="title" type='text' size="50" label="Title" value="motif1"/>    
+  </inputs>
+  <outputs>
+    <data format="pdf" name="output" />
+  </outputs>
+  <help>
+
+**Description**
+
+Generate sequence logo for MEME motif file. See details here:
+
+http://meme.sdsc.edu/meme/doc/ceqlogo.html
+
+**Example output**
+
+.. image:: ./static/images/memelogo.png
+
+  </help>
+</tool>