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1 <tool id="genometric_correlation" name="Genometric Correlation">
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2 <description>between two files of genomic intervals</description>
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3 <command interpreter="Rscript --vanilla">
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4 Start_GenometriCorr.R $config $query $reference $output_options $output
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5 </command>
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6 <inputs>
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7 <param format="text" name="config" type="data" label="Configuration file"/>
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8 <param format="text" name="query" type="data" label="Query intervals file"/>
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9 <param format="text" name="reference" type="data" label="Reference intervals file"/>
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10 <param name="output_options" type="select" label="Type of output">
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11 <option value="plot">ECDF plots</option>
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12 <option value="vis">Graphic visualization</option>
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13 <option value="stats">Text output of statistics</option>
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14 <option value="plot_vis">All</option>
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15 </param>
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16 </inputs>
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17 <outputs>
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18 <data name="output" format="pdf"/>
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19 </outputs>
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20 <help>
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21 This tool determines the statistical relationship (if any) between two sets of genomic intervals. Output can be text only, plot (ECDF curves), or a more colorful graphic.
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22 </help>
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23 </tool> |
