Mercurial > repos > xuebing > sharplab_interval_analysis
diff StartGenometriCorr.xml @ 20:16ba480adf96
Uploaded
| author | xuebing |
|---|---|
| date | Sat, 31 Mar 2012 08:31:22 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/StartGenometriCorr.xml Sat Mar 31 08:31:22 2012 -0400 @@ -0,0 +1,23 @@ +<tool id="genometric_correlation" name="Genometric Correlation"> +<description>between two files of genomic intervals</description> +<command interpreter="Rscript --vanilla"> +Start_GenometriCorr.R $config $query $reference $output_options $output +</command> +<inputs> +<param format="text" name="config" type="data" label="Configuration file"/> +<param format="text" name="query" type="data" label="Query intervals file"/> +<param format="text" name="reference" type="data" label="Reference intervals file"/> +<param name="output_options" type="select" label="Type of output"> +<option value="plot">ECDF plots</option> +<option value="vis">Graphic visualization</option> +<option value="stats">Text output of statistics</option> +<option value="plot_vis">All</option> +</param> +</inputs> +<outputs> +<data name="output" format="pdf"/> +</outputs> +<help> +This tool determines the statistical relationship (if any) between two sets of genomic intervals. Output can be text only, plot (ECDF curves), or a more colorful graphic. +</help> +</tool> \ No newline at end of file