Mercurial > repos > xuebing > sharplab_interval_analysis

diff interval/bigWigAverageOverBed.xml @ 18:9bbb37e8683f

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author xuebing
date Sat, 31 Mar 2012 08:24:32 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/interval/bigWigAverageOverBed.xml	Sat Mar 31 08:24:32 2012 -0400
@@ -0,0 +1,12 @@
+<tool id="bigWigAverageOverBed" name="bigWigAverageOverBed">
+  <description>average interval coverage</description>
+  <command>bigWigAverageOverBed $bw $bed $outtab -bedOut=$outbed 2> err </command>
+  <inputs>
+    <param name="bw" format="bigwig" type="data" label="BigWig file"/>
+    <param name="bed" format="bed" type="data" label="Bed file"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="outtab" label="${tool.name} on ${on_string} (tab)"/>
+    <data format="bed" name="outbed" label="${tool.name} on ${on_string} (bed)"/>
+  </outputs>
+</tool>