# HG changeset patch
# User xuebing
# Date 1333209134 14400
# Node ID 869c7664e5842392006651deeace79f10ec79c4c
# Parent 783157ce28178728e53a28b190b55b06b82b85db
Uploaded
diff -r 783157ce2817 -r 869c7664e584 bedclean.xml
--- a/bedclean.xml Sat Mar 31 11:49:22 2012 -0400
+++ b/bedclean.xml Sat Mar 31 11:52:14 2012 -0400
@@ -1,9 +1,35 @@
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-404 Not Found
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-Not Found
-The requested URL /Xwuxbl/bedclean.xml was not found on this server.
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-Apache/2.2.14 (Ubuntu) Server at rous.mit.edu Port 80
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+ remove off-chromosome lines
+ bedclean.py $input $genome $output > $log
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+**Description**
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+remove lines that are
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+1. comment or track name lines
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+2. on chr*_random
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+3. or have negative coordinates
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+4. or the end is larger than chromosome size
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