diff mytools/fastashuffle1.xml @ 0:39217fa39ff2

Uploaded
author xuebing
date Tue, 13 Mar 2012 23:34:52 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mytools/fastashuffle1.xml	Tue Mar 13 23:34:52 2012 -0400
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+<tool id="seqshuffle" name="shuffle sequences">
+  <description>preserving mono-nucleotide frequency</description>
+  <command>cat $input | fasta-shuffle-letters > $output  </command>
+  <inputs>
+     <param name="input" type="data" format="fasta" label="Original FASTA sequence file"/>
+  </inputs>
+  <outputs>
+    <data format="fasta" name="output" />
+  </outputs>
+  <help>
+
+**Description**
+
+shuffle the position of nucleotides in each sequence, preserving the frequency of nucleotides in that sequence, but do not preserve di-nucleotide frequency. 
+
+  </help>
+</tool>