annotate tools/data_source/wormbase_test.xml @ 1:cdcb0ce84a1b

Uploaded
author xuebing
date Fri, 09 Mar 2012 19:45:15 -0500
parents 9071e359b9a3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
1 <?xml version="1.0"?>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
2 <tool name="Wormbase" id="wormbase_test" tool_type="data_source">
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
3 <description>test server</description>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
4 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
5 <inputs action="http://dev.wormbase.org/db/seq/gbrowse/c_elegans/" check_values="false" target="_top">
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
6 <display>go to Wormbase test server $GALAXY_URL</display>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
7 <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=wormbase_test" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
8 </inputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
9 <request_param_translation>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
10 <request_param galaxy_name="URL" remote_name="URL" missing="">
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
11 <append_param separator="&amp;" first_separator="?" join="=">
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
12 <value name="d" missing="" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
13 <value name="dbkey" missing="" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
14 <value name="q" missing="" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
15 <value name="s" missing="" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
16 <value name="t" missing="" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
17 </append_param>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
18 </request_param>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
19 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
20 <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" />
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
21 </request_param_translation>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
22 <uihints minwidth="800"/>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
23 <outputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
24 <data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
25 </outputs>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
26 <options sanitize="False" refresh="True"/>
9071e359b9a3 Uploaded
xuebing
parents:
diff changeset
27 </tool>