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1 <tool id="maf_limit_size1" name="Filter MAF blocks" version="1.0.1">
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2 <description>by Size</description>
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3 <command interpreter="python">maf_limit_size.py $input1 $out_file1 $min_size $max_size</command>
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4 <inputs>
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5 <page>
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6 <param format="maf" name="input1" label="MAF File" type="data"/>
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7 <param name="min_size" label="Minimum Size" value="0" type="integer"/>
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8 <param name="max_size" label="Maximum Size" value="0" type="integer" help="A maximum size less than 1 indicates no limit"/>
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9 </page>
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10 </inputs>
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11 <outputs>
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12 <data format="maf" name="out_file1" />
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13 </outputs>
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14 <tests>
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15 <test>
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16 <param name="input1" value="3.maf" ftype="maf" />
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17 <param name="min_size" value="0"/>
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18 <param name="max_size" value="0"/>
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19 <output name="out_file1" file="maf_limit_size1_out.maf" />
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20 </test>
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21 </tests>
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22 <help>
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23
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24 **What it does**
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25
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26 This tool takes a MAF file and a size range and extracts the MAF blocks which fall within the specified range.
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27
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28 ------
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29
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30 **Citation**
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31
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32 If you use this tool, please cite `Blankenberg D, Taylor J, Nekrutenko A; The Galaxy Team. Making whole genome multiple alignments usable for biologists. Bioinformatics. 2011 Sep 1;27(17):2426-2428. <http://www.ncbi.nlm.nih.gov/pubmed/21775304>`_
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33
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34
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35 </help>
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36 </tool>
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